AT3G17900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 45 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6128983..6133069 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 91585.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.51 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||
| Length | 838 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNFLLRSASS ATHRPPVIEP PATPPQPPPE TAKPGVTLEG LIAEEHFPQY PSVDEDLDRV GDGSGDLDGN GESNAKSGGS GMERFSDVSE EQGWIAIPYK 101: EIPDNWSESV DIHSLRSLDR SFVFPGEQIQ ILACLSESKG DTEIITPFKV AEVMSRTGQR KVSDKQNGDM SDGASTPSGD GEMSPDAQFA TQNGDSPCKE 201: SLDSQKDLSD GESILRMEDH KRRTEDLLSR FQKSHFFVRI AESGEPLWSK KSSLVADTEM DEERKRTKSR PCVSAFVDRG DFDPNVSGGV ARSKAKCCAL 301: PNGDIVVSLQ VYIVDCPKEP IIEILQFEKH QDQDQNPEND KDPYGNLLKW LIPLDNTISQ QPRSLPPPIT PSPSISSTAH KPAISSTSGS QLFSFGHFRS 401: YSMSALPPNT APVTGPIKTQ SSKPSFDIED WDSYSGQTVR NGQKSGTEEL LSFRGVALER DRFSVRCGLE GICIPGRRWR RKLEIIQPIE INSFAADCNT 501: DDLLCVQIKN VAPTHAPDIV IYIDAITIVF EEAGKNASPS SVPIACIEAG NEHSLPNLTL RKGEEHSFIV KPAFSVGSNL KPSAARNKLK SSSLSLPTVN 601: FERKGSGLSG DQYAVMVSCR CNYTESRLFF KQRTKWRPRV SRDLMISVAS EMSGEPCGPH GRASQLPVQI LTLQASNLTS EDLSLTVLAP ASFTSPPTVV 701: SLNSTPTTPI SPFLGFSDFT ERVQNEKRNT TVRKQQSLPP IPLETRTENN TNGESSNPSD VVPKSGLGCT HLWLQSRVPL GCVPSKSTAT IKLELLPLTD 801: GIITLDTLQI HAKEKGRRYI PEQSLKINAT SSISSGIF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)