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AT2G21390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.942
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30961429 (2019): nucleus
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Coatomer, alpha subunit
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Coatomer, alpha subunit; FUNCTIONS IN: structural molecule activity, transporter activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPI vesicle coat, CUL4 RING ubiquitin ligase complex, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Coatomer, alpha subunit (InterPro:IPR016391), WD40 repeat, subgroup (InterPro:IPR019781), Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044), Coatomer, alpha subunit, C-terminal (InterPro:IPR010714); BEST Arabidopsis thaliana protein match is: Coatomer, alpha subunit (TAIR:AT1G62020.1); Has 80927 Blast hits to 31058 proteins in 786 species: Archae - 62; Bacteria - 8761; Metazoa - 33547; Fungi - 17467; Plants - 10193; Viruses - 0; Other Eukaryotes - 10897 (source: NCBI BLink).
Protein Annotations
BioGrid:2031eggNOG:ENOG410XPZSeggNOG:KOG0292EMBL:AC006841
EMBL:AK228692EMBL:CP002685EnsemblPlants:AT2G21390EnsemblPlants:AT2G21390.1
entrez:816678Gene3D:2.130.10.10GeneID:816678Genevisible:Q9SJT9
GO:GO:0005198GO:GO:0005829GO:GO:0006886GO:GO:0016020
GO:GO:0016192GO:GO:0030126Gramene:AT2G21390.1hmmpanther:PTHR19876
hmmpanther:PTHR19876:SF7HOGENOM:HOG000195913InParanoid:Q9SJT9InterPro:IPR001680
InterPro:IPR006692InterPro:IPR010714InterPro:IPR011048InterPro:IPR015943
InterPro:IPR016391InterPro:IPR017986InterPro:IPR019775InterPro:IPR020472
InterPro:IPR024977iPTMnet:Q9SJT9KEGG:ath:AT2G21390KO:K05236
OMA:DMGEEINPaxDb:Q9SJT9Pfam:PF00400Pfam:PF04053
Pfam:PF06957Pfam:PF12894Pfam:Q9SJT9Pfscan:PS50082
Pfscan:PS50294PhylomeDB:Q9SJT9PIR:F84600PIRSF:PIRSF003354
PRIDE:Q9SJT9PRINTS:PR00320PRO:PR:Q9SJT9PROSITE:PS00678
PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:Q9SJT9Proteomes:UP000006548
Reactome:R-ATH-199997Reactome:R-ATH-6807878RefSeq:NP_179734.1scanprosite:PS00678
SMART:SM00320SMR:Q9SJT9STRING:3702.AT2G21390.1SUPFAM:SSF50978
SUPFAM:SSF51004TAIR:AT2G21390UniGene:At.28070UniProt:Q9SJT9
Coordinates (TAIR10) chr2:+:9152428..9156577
Molecular Weight (calculated) 136474.00 Da
IEP (calculated) 6.91
GRAVY (calculated) -0.21
Length 1218 amino acids
Sequence (TAIR10)
(BLAST)
0001: MLTKFETKSN RVKGLSFHPK RPWILASLHS GVIQLWDYRM GTLIDRFDEH EGPVRGVHFH NSQPLFVSGG DDYKIKVWNY KTHRCLFTLL GHLDYIRTVQ
0101: FHHENPWIVS ASDDQTIRIW NWQSRTCISV LTGHNHYVMC ASFHPKEDLV VSASLDQTVR VWDIGALKKK SASPADDLMR FSQMNSDLFG GVDAIVKYVL
0201: EGHDRGVNWA SFHPTLPLIV SGADDRQVKL WRMNETKAWE VDTLRGHMNN VSSVMFHAKQ DIIVSNSEDK SIRVWDATKR TGIQTFRREH DRFWILAVHP
0301: EINLLAAGHD NGMIVFKLER ERPAFALSGD SLFYAKDRFL RYYEYSTQKD SQVIPIRRPG TPSLNQSPRT LSYSPTENAV LICSDLDGGS YELYIIPKDS
0401: VGRSDVVQDA KRGTGGSAVF IARNRFAVLE KSTSQVLVKN LKNEVVKKSS LPIPTDAIFY AGTGNLLCRS EDKVVIFDLQ QRLVLGELQT PFVRYVVWSN
0501: DMESVALLSK HTIIIASKKL VLQCTLHETI RVKSGAWDDN GVFIYTTLNH IKYCLPNGDS GIIRTLDVPI YITKVSGNTI FCLDRDGKNR AITINATEYI
0601: FKLALLRKKY DHVMSMIKNS QLCGQAMIAY LQQKGFPEVA LHFVEDERIR FNLALESGNI SVAVASATEI NEKDHWYRLG VEALRQGNSR IVEFAYQQTK
0701: NFERLSFLYL ITGNLDKLSK LMKIAEVKNN VMGQFHNALY LGDVKERVKI LENAGHLPLA YITASVHGLT DIAERLAIEL GDNVPSLPEG KTPSLLMPPS
0801: PIMCGGDWPL LRVMKGIFEG GLESANRGAV DEEEEDVEGD WGEGLDKFDV DGMENTDIEA ILDGAEAGEE EDDEEGGWGL DLDLPPELDT PKASANARSS
0901: TFVTPPQGMP VSQIWSQKSS LAAEQAAAGS FDTAMRLLHR QLGIKNFAPL KSMFLDLFSG SHSYLRAFSS SPVVPLAIER GWSESSSPNV RGPPALVFDF
1001: SQLEAKLKSG YKATTAGKLS EALRVFLSIL QTIPLVVVES RREVDEVKEL VIIVKEYVLG LQLELKRREM KDDPVRQQEL AAYFTHCKLQ TPHLRLAYFS
1101: AMTVCYKSKN MATAAHFARS LLDTNPTIES QARTARQVMQ AAERNMTDAT TLNYDFRNPF VICGSTYVPI YKGQKDVACP YCTARFVPSQ EGNICSVCDL
1201: AVIGADASGL LCSASQVR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)