AT4G31480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.915 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Coatomer, beta subunit | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Coatomer, beta subunit; FUNCTIONS IN: clathrin binding, structural molecule activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: male gametophyte, guard cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Coatomer, beta subunit, C-terminal (InterPro:IPR011710), Armadillo-like helical (InterPro:IPR011989), Coatomer, beta subunit (InterPro:IPR016460), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Coatomer, beta subunit (TAIR:AT4G31490.1); Has 2798 Blast hits to 2724 proteins in 309 species: Archae - 0; Bacteria - 0; Metazoa - 1200; Fungi - 640; Plants - 392; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:15264145..15267384 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 106151.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.61 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 948 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDKSSTMLVH YDKGTPAVAN EIKEALEGND VEAKVDAMKK AIMLLLNGET IPQLFITIIR YVLPSEDHTI QKLLLLYLEL IEKTDSKGKV LPEMILICQN 101: LRNNLQHPNE YIRGVTLRFL CRMKETEIVE PLTPSVLQNL EHRHPFVRRN AILAIMSIYK LPQGDQLFVD APEMIEKVLS TEQDPSAKRN AFLMLFTCAE 201: ERAVNYLLSN VDKVSDWNES LQMVVLELIR SVCKTKPAEK GKYIKIIISL LSATSSAVIY ECAGTLVSLS SAPTAIRAAA NTYCQLLLSQ SDNNVKLILL 301: DRLYELKTLH RDIMVELIID VLRALSSPNL DIRRKTLDIS LDLITHHNIN EVVQMLKKEV VKTQSGELEK NGEYRQMLIQ AIHACAVKFP EVASTVVHLL 401: MDFLGDSNVA SALDVVVFVR EIIETNPKLR VSIITRLLDT FYQIRAGKVC PCALWIIGEY CLSLSEVESG ISTITQCLGE LPFYSVSEES EPTETSKKIQ 501: PTSSAMVSSR KPVILADGTY ATQSAASETT FSSPTVVQGS LTSGNLRALL LTGDFFLGAV VACTLTKLVL RLEEVQSSKT EVNKTVTQAL LIMVSMLQLG 601: QSPVSPHPID NDSYERIVLC IKLLCHRNDE MKKIWLESCR QSFVKMISEK QLREMEELKA KTQTTHAQPD DLIDFFHLKS RKGMSQLELE DQVQDDLKRA 701: TGEFTKDEND ANKLNRILQL TGFSDPVYAE AYVTVHHYDI ALEVTVINRT KETLQNLCLE LATMGDLKLV ERPQNYSLAP ERSMQIKANI KVSSTETGVI 801: FGNIVYETSN VMERNVVVLN DIHIDIMDYI SPAVCSEVAF RTMWAEFEWE NKVAVNTTIQ NEREFLDHII KSTNMKCLTA PSAIEGECGF LAANLYAKSV 901: FGEDALVNVS IEKQTDGALS GYIRIRSKTQ GIALSLGDKI TLKQKGSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)