AT3G15980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.931 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Coatomer, beta' subunit | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 77112 Blast hits to 32696 proteins in 822 species: Archae - 74; Bacteria - 8637; Metazoa - 30981; Fungi - 17314; Plants - 9768; Viruses - 0; Other Eukaryotes - 10338 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5411699..5418313 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 102482.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.57 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 909 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPLRLDIKRK FAQRSERVKS VDLHPTEPWI LASLYSGTVC IWNYQTQTIT KSFEVTELPV RSAKFIPRKQ WVVAGADDMY IRVYNYNTMD KVKVFEAHSD 101: YIRCVAVHPT LPYVLSSSDD MLIKLWDWEN GWACTQIFEG HSHYVMQVVF NPKDTNTFAS ASLDRTIKIW NLGSPDPNFT LDAHQKGVNC VDYFTGGDKP 201: YLITGSDDHT AKVWDYQTKS CVQTLDGHTH NVSAVCFHPE LPIIITGSED GTVRIWHATT YRLENTLNYG LERVWAIGYI KSSRRVVIGY DEGTIMVKLG 301: REIPVASMDS SGKIIWAKHN EIQTANIKSI GAGYEATDGE RLPLSVKELG TCDLYPQSLK HNPNGRFVVV CGDGEYIIYT ALAWRNRSFG SGLEFVWSSE 401: GECAVRESSS KIKIFSKNFQ ERKSIRPTFS AEKIFGGTLL AMCSNDFICF YDWAECRLIQ QIDVTVKNLY WAESGDLVAI ASDTSFYILK YNRELVSSHF 501: DSGRPTDEEG VEDAFEVLHE NDERVRTGIW VGDCFIYNNS SWKLNYCVGG EVTTMYHLDR PMYLLGYIAN QSRVYLVDKE FNVIGYTLLL SLIEYKTLVM 601: RGDLDRANQI LPTIPKEQHN NVAHFLESRG MIEDALEIAT DPDYKFDLAI QLGRLEIAKE IAEEVQSESK WKQLGELAMS SGKLQLAEDC MKYAMDLSGL 701: LLLYSSLGDA EGVSKLACLA KEQGKNNVAF LCLFTLGRLE DCLQLLVESN RIPEAALMAR SYLPSKVSEI VALWREDLSK VNPKAAESLA DPEEYSNLFE 801: DWQVALSVEA NTAETRGVYT AAENYPSHAD KPSITLVEAF RNLQVEAEES LENGNIDHEV AEENGHVENE GDEEEQQEEE VNEEEGVVDA DSTDGAVLVN 901: GSEVLTPHP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)