AT1G29310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SecY protein transport family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SecY protein transport family protein; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein secretion, protein transport; LOCATED IN: mitochondrion, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208), Translocon Sec61/SecY, plug domain (InterPro:IPR019561); BEST Arabidopsis thaliana protein match is: SecY protein transport family protein (TAIR:AT2G34250.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:10252662..10254526 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52071.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.28 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.54 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 475 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGGGFRVLHL VRPFLAFLPE VQSADRKIPF REKVIYTVIS LFIFLVCSQL PLYGIHSTTG ADPFYWMRVI LASNRGTVME LGITPIVTSG LVMQLLAGSK 101: IIEVDNNVRE DRALLNGAQK LLGILIAIGE AVAYVLSGMY GPVGQLGVGN AILIILQLFF AGIIVICLDE LLQKGYGLGS GISLFIATNI CESIIWKAFS 201: PTTINTGRGA EFEGAVIALF HMLITKSNKV AALRQAFYRQ NLPNVTNLLA TVLIFLIVIY FQGFRVVLPV RSKSARGQQG SYPIKLFYTS NMPIILQSAL 301: VSNLYFISQL LYRKFSGNFF VNLLGQWKES EYSGQSIPVS GLAYLITAPA SFADMAAHPF HALFYIVFML TACALFSKTW IEVSGSSARD VAKQLKEQQM 401: VMPGHRESNL QKELNRYIPT AAAFGGVCIG ALTVLADFMG AIGSGTGILL AVTIIYQYFE TFEKEKASEL GFFGF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)