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AT2G25110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
ASURE: endoplasmic reticulum
What is SUBAcon?
Predictors External Curations
AmiGO : endoplasmic reticulum 16618929
AmiGO : endoplasmic reticulum 19763086
SwissProt : extracellular 16381842
TAIR : endoplasmic reticulum 16618929
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : stromal cell-derived factor 2-like protein precursor
Curator
Summary (TAIR10)
Encodes an endoplasmic reticulum protein SDF2 (stromal-derived factor-2). Forms a complex SDF2-ERdj3B-BiP that is required for the proper accumulation of the surface-exposed leucine-rich repeat receptor kinases EFR. EFR is involved in PAMP (pathogen associated molecular patterns) triggered immunity.
Computational
Description (TAIR10)
stromal cell-derived factor 2-like protein precursor (SDF2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to bacterium, defense response to fungus, PAMP-induced immunity; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: MIR (InterPro:IPR003608), MIR motif (InterPro:IPR016093); Has 1035 Blast hits to 992 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 386; Fungi - 512; Plants - 64; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Protein Annotations
BioGrid:2401DNASU:817049eggNOG:ENOG410ZBU3eggNOG:KOG3358
EMBL:AY057588EMBL:AY088079EMBL:AY143822EMBL:CP002685
EnsemblPlants:AT2G25110EnsemblPlants:AT2G25110.1entrez:817049GeneID:817049
Genevisible:Q93ZE8GO:GO:0000032GO:GO:0005783GO:GO:0007275
GO:GO:0016020GO:GO:0042742GO:GO:0044845GO:GO:0050832
GO:GO:0052033GO:GO:1900101Gramene:AT2G25110.1hmmpanther:PTHR10050
hmmpanther:PTHR10050:SF33HOGENOM:HOG000236354InParanoid:Q93ZE8IntAct:Q93ZE8
InterPro:IPR016093InterPro:IPR027005KEGG:ath:AT2G25110MINT:MINT-7950181
OMA:MAQPSQNPANTHER:PTHR10050PaxDb:Q93ZE8PDB:3MAL
PDBsum:3MALPfam:PF02815Pfam:Q93ZE8Pfscan:PS50919
PhylomeDB:Q93ZE8PIR:D84644PRIDE:Q93ZE8PRO:PR:Q93ZE8
PROSITE:PS50919ProteinModelPortal:Q93ZE8Proteomes:UP000006548RefSeq:NP_565585.1
SMART:SM00472SMR:Q93ZE8STRING:3702.AT2G25110.1SUPFAM:SSF82109
TAIR:AT2G25110tair10-symbols:AtSDF2tair10-symbols:ATSDLtair10-symbols:SDF2
UniGene:At.14653UniProt:Q93ZE8
Coordinates (TAIR10) chr2:+:10684428..10685838
Molecular Weight (calculated) 23936.20 Da
IEP (calculated) 8.12
GRAVY (calculated) -0.48
Length 218 amino acids
Sequence (TAIR10)
(BLAST)
001: MALGFFCLAI FLYLSLDPDS GYTSASAAAS GKEGVEITYG SAIKLMHEKT KFRLHSHDVP YGSGSGQQSV TGFPGVVDSN SYWIVKPVPG TTEKQGDAVK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)