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AT1G56340.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : endoplasmic reticulum 16618929
AmiGO : mitochondrion 12492832
AmiGO : mitochondrion 14671022
SwissProt : endoplasmic reticulum 16381842
TAIR : plastid 15028209
TAIR : mitochondrion 14671022
TAIR : plasma membrane 17151019
TAIR : endoplasmic reticulum 16618929
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18931141 (2008): endoplasmic reticulum
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24393051 (2015): endoplasmic reticulum
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24344820 (2014): Golgi trans-Golgi network
  • PMID:24124904 (2013): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:15028209 (2004): plastid
  • PMID:14671022 (2004): mitochondrion
  • PMID:12492832 (2002): mitochondrion
FP Images

Arabidopsis cell culture (peroxisomal marker)

At1g-GFP-56340
(full-length)
RFP-peroxisomal markeroverlay

Images by John Bussel

onion epidermal cell layer (peroxisomal marker)

At1g-GFP-56340
(full-length)
RFP-peroxisomal markeroverlay

Images by John Bussel
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : calreticulin 1a
Curator
Summary (TAIR10)
Encodes one of three Arabidopsis calreticulins. In CRT-deficient mouse fibroblasts, this protein restores ER Ca2+ levels.
Computational
Description (TAIR10)
calreticulin 1a (CRT1a); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, response to salt stress, calcium ion homeostasis; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Calreticulin (InterPro:IPR009169), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: calreticulin 1b (TAIR:AT1G09210.1); Has 12789 Blast hits to 7186 proteins in 689 species: Archae - 27; Bacteria - 946; Metazoa - 4832; Fungi - 1301; Plants - 669; Viruses - 333; Other Eukaryotes - 4681 (source: NCBI BLink).
Protein Annotations
BioGrid:27312eggNOG:ENOG410XRR7eggNOG:KOG0674EMBL:AC058785
EMBL:AC069159EMBL:AY062628EMBL:BT008511EMBL:CP002684
EMBL:U66343EnsemblPlants:AT1G56340EnsemblPlants:AT1G56340.1entrez:842087
ExpressionAtlas:O04151Gene3D:2.10.250.10Gene3D:2.60.120.200GeneID:842087
Genevisible:O04151GO:GO:0005509GO:GO:0005739GO:GO:0005774
GO:GO:0005783GO:GO:0005788GO:GO:0006457GO:GO:0006979
GO:GO:0009506GO:GO:0009507GO:GO:0009651GO:GO:0030246
GO:GO:0046686GO:GO:0048046hmmpanther:PTHR11073hmmpanther:PTHR11073:SF17
HOGENOM:HOG000192435InParanoid:O04151InterPro:IPR001580InterPro:IPR009033
InterPro:IPR009169InterPro:IPR013320InterPro:IPR018124iPTMnet:O04151
ncoils:CoilOMA:HVILSYKPANTHER:PTHR11073PaxDb:O04151
Pfam:O04151Pfam:PF00262PhylomeDB:O04151PIR:C96605
PIRSF:PIRSF002356PRIDE:O04151PRINTS:PR00626PRO:PR:O04151
PROSITE:PS00014PROSITE:PS00803PROSITE:PS00804PROSITE:PS00805
ProteinModelPortal:O04151Proteomes:UP000006548Reactome:R-ATH-901042RefSeq:NP_176030.1
scanprosite:PS00803scanprosite:PS00804scanprosite:PS00805SMR:O04151
STRING:3702.AT1G56340.1SUPFAM:SSF49899SUPFAM:SSF63887SWISS-2DPAGE:O04151
TAIR:AT1G56340tair10-symbols:AtCRT1atair10-symbols:CRT1tair10-symbols:CRT1a
TMHMM:TMhelixUniGene:At.10808UniProt:O04151
Coordinates (TAIR10) chr1:-:21090059..21092630
Molecular Weight (calculated) 48529.40 Da
IEP (calculated) 4.20
GRAVY (calculated) -1.01
Length 425 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKLNPKFIS LILFALVVIV SAEVIFEEKF EDGWEKRWVK SDWKKDDNTA GEWKHTAGNW SGDANDKGIQ TSEDYRFYAI SAEFPEFSNK DKTLVFQFSV
101: KHEQKLDCGG GYMKLLSDDV DQTKFGGDTP YSIMFGPDIC GYSTKKVHAI LTYNGTNHLI KKEVPCETDQ LTHVYTFVLR PDATYSILID NVEKQTGSLY
201: SDWDLLPAKK IKDPSAKKPE DWDDKEYIPD PEDTKPAGYD DIPKEIPDTD AKKPEDWDDE EDGEWTAPTI PNPEYNGEWK PKKIKNPAYK GKWKAPMIDN
301: PEFKDDPELY VFPKLKYVGV ELWQVKSGSL FDNVLVSDDP EYAKKLAEET WGKHKDAEKA AFDEAEKKRE EEESKDAPAE SDAEEEAEDD DNEGDDSDNE
401: SKSEETKEAE ETKEAEETDA AHDEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)