AT5G11040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRS120 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRS120; CONTAINS InterPro DOMAIN/s: Transport protein Trs120 (InterPro:IPR013935); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:3495332..3500610 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 129602.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.20 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1186 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEPDVSIETL SIIRIAVLPI GTIPPTLLRD YHSMLLRHHT IALSAISSFY TEHQKSPFTN QPWDSGSLRF KFVLGGSPPS PWEDFQSNRK MLAVIGLCHC 0101: PSSPDLDSVT EKFNVACKSY SSALVRRCFA FSPGDSQLED GDKKGENLIL FPPSDKQTQE FHLQTMMQDI AASLLMEFEK WVLQAESAGT ILKTPLDSQA 0201: SLNSEEVIKA KKRRLGRAQK TIGDYSLLAG SPVDANAHYS TALELARLTG DYFWYAGALE GSVCALLVDR MGQRDVALED EVRYRYTNVI LHYRKSFIQE 0301: IAQRVSPLSF ELEATLKLAR FLCRRELAKE VVELLTNAAD GAKSLIDASD RLILYVEVAR LFGALGYQRK AAFFCRQVAQ LYLQQDNRLA AISAMQVLSM 0401: TTDAYRIQSR ASMSKVSVNN ETGRLPDAGK MHHHSIVSLF ESHWSTLQMV VLREILLSAV RAGDPLAAWS AAARLLRWHY PLITPSGQNG LANSLANSAD 0501: RLPSGTRCAD PALPFVRLFS FPLHSSQVDI VKRNPAREDW WTGSAPSGPF IYTPFSKGDA NESSKQELIW VVGEPVQVLV ELANPCCFDL RIDSIYLSAH 0601: SSNFDAFPVS VDIPPNSAKV ITLSGIPTAV GPVTIPGCTV HCFGVITEHV FRDVDNLLLG AAQGLVFSDP FRSCGSAKLR HVFVPNISVA PPLPLLVANV 0701: VGGDGAIILY EGEIREVCIN FANAGTVPIV QAHVSLSGKN QDAVISIADE ALQSALPLKP GAQVTLPVTL KAWHVGPTDS DNTMSSGRNA AGNTGRPKDG 0801: TSPSLLIHYA GPLSNNGDSQ EKESIVPPGR RLVVPLQICV LQGLSFVKAR LLSMEIPAHV SDNLRDEDIE RESNADSLVK INPFRGSWGL RFLELELSNP 0901: TDVVFEISVF VQLENSAKED DSSPVQDSPE YEYPKTRIDR DYSARVLIPL EHFKLPVLDG SFFTKDPPPG SPSSSRNPSF SEKNTKAEIN TLIKNLISKI 1001: KVRWQSGRNS SGELDIKDAI QTALQTTVMD VLLPDPLTFG FRLVRNGLEK DPETKAESPF SKGSVLSHEV TPMEVLVRNN TSEAIKLNLS VTCRDVAGQN 1101: CTEGADATVL WAGALSGISM EVAPLQEARH CFSLFFLVPG EYTMVAAAVI EDANNVLRAR AGTASPNEPI FCRGPPFHVC VAGGAL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)