AT2G07360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SH3 domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SH3 domain-containing protein; FUNCTIONS IN: binding; LOCATED IN: cytosol, nucleus, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Src homology-3 domain (InterPro:IPR001452), Armadillo-type fold (InterPro:IPR016024); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:3047623..3057099 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 130085.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.41 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||
| Length | 1196 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAESSGTTLM DLISADPTPV PAQSTSSSAS STASQPTSAS ASSSSHLHHP MSTKTTLGEK KSKRATLMQI QNDTISVAKA ALNPVKANIM PQRQRQKKKP 0101: VSYSQLARSI HELAATLDQK SSQKQLVNHV FPKLAVYNSV DPSLAPSLLM LNQQCEDRNV LRYVYYYLAR ILSDTGMTPG GGIPTPNWDA LADIDAGGGV 0201: TRADVVPRIV NQLTNEATNS EFEFHARRLQ ALKALTYSPS GNSELLSKLY EIVFGILEKV GDVPHKRKKG VFGTKGGDKE SIMRSNLQYA AMSALRRLPL 0301: DPGNPLFLHR AAQGVFFADP VAVRHSLEIL SELATRDPYT VAMTLEKLAS PTGALQDILH MNDVLARVSL ARLCHSISRA RALDERPDIR SQFNSILYQL 0401: LLDPSERVCY EAILCILGKH DNTERMDERA AGWYRLTREI LKLPEAPSLS SKDKSNKTKR PQPLIKLVMR RLESSFRSFS RPVLHAAARV VQEMGKSRAA 0501: AFAMGLQDID ESVHVNAFSD ALDDAETNES SHPEGIRRTS SISAGPGRSD TIASLLAALM EVVRTTVACE CVYVRAMVIK ALIWMQSPDE SLDELKSIIA 0601: SELSDPGWPA ALVNDVLLTL HARFKATPDM AVILLEIARI FATKVPGKID ADVLQLLWKT CLVGAGPDGK HTALEAVTIV LDLPPPQPGS MAGLTSIDRV 0701: SASDPKSALA LQKLVQAAVW FLGENANYAA SEYAWESATP PGTALMMLDA DKMVAAASSR NPTLAGALTR LQRCAFSGSW EVRIVAIQAL TTIAIRSGEP 0801: FRLQIYEFLY TLAEGGVQSQ LSEMHLSNGE DQGASGTGLG VLITPMLKVL DEMYVGQDEL IKDIRHHDNA NKEWKDEELK KLYENHERLL DFVSMFCFIP 0901: RAKYLPLGPI SAKLIDTYRT KHNITASTGS TDPAVVATGI SDLIYESTQP APAASNSSGL DDDLVNAWAA NLGDDGLLGN NAPAMSRVNE FIAGVGTDAP 1001: DVEEENVFSR PSVGYDDMWA KTLLETSELE EEDARSGSSS PDSAGSVESS ISSHFGGMNY PSLFSSKPSS QATAKSGGSK YQSTYEGYGS PIREEPPPPY 1101: SYSEPQSRES FENPVAGSGS RSYESDDEEP RKSTGTRFGT ALYDFTAGGD DELNLTAEEE LEIEYEVDGW FYVKKKRPGR DGKMAGLVPV LYVNQS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)