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AT5G42080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30447334 (2019): plasma membrane
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:24124904 (2013): plastid
  • PMID:24012629 (2013): nucleus
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22550958 (2012): plastid
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : dynamin-like protein
Curator
Summary (TAIR10)
Encodes a dynamin-like protein related to phragmoplastin. Mutations in this gene, in combination with mutation in ADL1E, result in defects in embryogenesis, cell plate formation and trichome branching. Also controls vascular patterning in combination with VAN3 and GNOM. DRP2B and DRP1A participate together in clathrin-coated vesicle formation during endocytosis.
Computational
Description (TAIR10)
dynamin-like protein (DL1); FUNCTIONS IN: protein binding, clathrin binding, GTP binding, GTPase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase domain (InterPro:IPR001401), Dynamin, GTPase region, conserved site (InterPro:IPR019762), GTPase effector domain, GED (InterPro:IPR020850), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: DYNAMIN-like 1B (TAIR:AT3G61760.1); Has 2870 Blast hits to 2761 proteins in 321 species: Archae - 2; Bacteria - 66; Metazoa - 1056; Fungi - 810; Plants - 578; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G42080-MONOMERBioCyc:ARA:GQT-1043-MONOMERBioCyc:ARA:GQT-1044-MONOMERBioGrid:19463
DIP:DIP-37642NeggNOG:COG0699eggNOG:KOG0446EMBL:AB017067
EMBL:AK230240EMBL:AY088201EMBL:AY094408EMBL:BT001063
EMBL:BT025994EMBL:CP002688EMBL:L36939EMBL:L38614
EnsemblPlants:AT5G42080EnsemblPlants:AT5G42080.1entrez:834213ExpressionAtlas:P42697
Gene3D:3.40.50.300GeneID:834213Genevisible:P42697GO:GO:0000911
GO:GO:0003924GO:GO:0005525GO:GO:0005773GO:GO:0005774
GO:GO:0005829GO:GO:0005874GO:GO:0005886GO:GO:0009504
GO:GO:0009506GO:GO:0009524GO:GO:0009535GO:GO:0009793
GO:GO:0009920GO:GO:0010051GO:GO:0010091GO:GO:0030276
GO:GO:0043424GO:GO:0072583hmmpanther:PTHR11566hmmpanther:PTHR11566:SF58
HOGENOM:HOG000161068InParanoid:P42697IntAct:P42697InterPro:IPR000375
InterPro:IPR001401InterPro:IPR003130InterPro:IPR019762InterPro:IPR020850
InterPro:IPR022812InterPro:IPR027417InterPro:IPR030381iPTMnet:P42697
MINT:MINT-7712636OMA:DKMREGSPANTHER:PTHR11566PaxDb:P42697
PDB:3T34PDB:3T35PDBsum:3T34PDBsum:3T35
Pfam:P42697Pfam:PF00350Pfam:PF01031Pfam:PF02212
Pfscan:PS51388Pfscan:PS51718PhylomeDB:P42697PIR:S59558
PRIDE:P42697PRINTS:PR00195PRO:PR:P42697PROSITE:PS00410
PROSITE:PS51388PROSITE:PS51718ProteinModelPortal:P42697Proteomes:UP000006548
RefSeq:NP_568602.3RefSeq:NP_851120.1scanprosite:PS00410SMART:SM00053
SMART:SM00302SMR:P42697STRING:3702.AT5G42080.1SUPFAM:SSF52540
TAIR:AT5G42080tair10-symbols:ADL1tair10-symbols:ADL1Atair10-symbols:AG68
tair10-symbols:DL1tair10-symbols:DRP1Atair10-symbols:RSW9UniGene:At.10365
UniProt:P42697
Coordinates (TAIR10) chr5:-:16820661..16824536
Molecular Weight (calculated) 68176.20 Da
IEP (calculated) 8.51
GRAVY (calculated) -0.28
Length 610 amino acids
Sequence (TAIR10)
(BLAST)
001: MENLISLVNK IQRACTALGD HGDSSALPTL WDSLPAIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLQKID DGTREYAEFL HLPRKKFTDF
101: AAVRKEIQDE TDRETGRSKA ISSVPIHLSI YSPNVVNLTL IDLPGLTKVA VDGQSDSIVK DIENMVRSYI EKPNCIILAI SPANQDLATS DAIKISREVD
201: PSGDRTFGVL TKIDLMDKGT DAVEILEGRS FKLKYPWVGV VNRSQADINK NVDMIAARKR EREYFSNTTE YRHLANKMGS EHLAKMLSKH LERVIKSRIP
301: GIQSLINKTV LELETELSRL GKPIAADAGG KLYSIMEICR LFDQIFKEHL DGVRAGGEKV YNVFDNQLPA ALKRLQFDKQ LAMDNIRKLV TEADGYQPHL
401: IAPEQGYRRL IESSIVSIRG PAEASVDTVH AILKDLVHKS VNETVELKQY PALRVEVTNA AIESLDKMRE GSKKATLQLV DMECSYLTVD FFRKLPQDVE
501: KGGNPTHSIF DRYNDSYLRR IGSNVLSYVN MVCAGLRNSI PKSIVYCQVR EAKRSLLDHF FAELGTMDMK RLSSLLNEDP AIMERRSAIS KRLELYRAAQ
601: SEIDAVAWSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)