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AT4G14160.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
endoplasmic reticulum 0.500
golgi 0.500
ASURE: endoplasmic reticulum,golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22550958 (2012): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Sec23/Sec24 protein transport family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT3G23660.1); Has 1490 Blast hits to 1472 proteins in 242 species: Archae - 0; Bacteria - 0; Metazoa - 529; Fungi - 429; Plants - 324; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5047eggNOG:KOG1986EMBL:CP002687EnsemblPlants:AT4G14160
EnsemblPlants:AT4G14160.1entrez:827055ExpressionAtlas:F4JUM1Gene3D:3.40.20.10
Gene3D:3.40.50.410GeneID:827055GO:GO:0005829GO:GO:0006886
GO:GO:0006888GO:GO:0008270GO:GO:0030127Gramene:AT4G14160.1
hmmpanther:PTHR11141InParanoid:F4JUM1InterPro:IPR002035InterPro:IPR006895
InterPro:IPR006896InterPro:IPR006900InterPro:IPR007123InterPro:IPR012990
InterPro:IPR029006OMA:SFIRIFEPaxDb:F4JUM1Pfam:PF00626
Pfam:PF04810Pfam:PF04811Pfam:PF04815Pfam:PF08033
PhylomeDB:F4JUM1PRIDE:F4JUM1ProteinModelPortal:F4JUM1Proteomes:UP000006548
Reactome:R-ATH-204005Reactome:R-ATH-5694530Reactome:R-ATH-983170RefSeq:NP_849541.2
SMR:F4JUM1STRING:3702.AT4G14160.1SUPFAM:SSF53300SUPFAM:SSF81811
SUPFAM:SSF81995SUPFAM:SSF82754SUPFAM:SSF82919TAIR:AT4G14160
UniGene:At.24579UniGene:At.72990UniProt:F4JUM1
Coordinates (TAIR10) chr4:+:8167574..8173026
Molecular Weight (calculated) 85382.10 Da
IEP (calculated) 5.84
GRAVY (calculated) -0.09
Length 773 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEMADKAKV EEMDWEGIDG VRMTWNLWPR TKVEASKCVI PLAASISPIR RHPLILDLPY APLDCKTCKA LLNAFARVDF AAMNWVCPFC YHRNHFPSHY
101: HSISEINLPG ELYPQYTTVE YTLPPDPSRV PPPPVFVFVL DTCMIEEELG YAKSALKQAI GLLPENALVG FVSFGTQAHV HELGFSEMSK VFVFKGNKEV
201: TKDQILDQLG LGSSSRRAPT SGFSKGAQNG FQSSGVDRFL LPASECEYTL DLLLDELQSD QWPVQPGHRP QRCTGVALSV AAGLLGACLP GTGARIVALV
301: GGPCTEGPGT IISKDLSDPV RSHKDLDKDA APYYKKAVKF YDSIAKQLVA QGHVLDLFAS ALDQVGVAEM KVAVESTGGL VVLSESFGHS VFKDSFKRMF
401: EDGEHSLGLC FNGTLEINCS KDIKIQGVIG PCSSLEKKGP NVADTVIGEG NTSAWKLCGL DKSTCLTVFF DLSSTGSTAP GALNQQLYLQ FITRYQNSEG
501: KSLARVTTLT RQWVDTAVST EVNLVQGFDQ ETAAVVMARL TSLKMETEEG FDATRWLDRT LIRLCSKFGE YRKDDPTSFT LKPYLTLFPQ FMFNLRRSQF
601: VQVFNNSPDE TAYFRMLLNR ENISNAIVMI QPSLTSYSFN SGPQAALLDV ASIAADKILL LDAYFSVVVF HGMTISQWRN MGYHHQPEHE AFAQLLQAPQ
701: EDSQMLVRER FPVPRLVVCD QHGSQARFLL AKLNPSATYN NANEMSAGSD IIFTDDVSLQ VFIEHLQKLA VQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)