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AT4G32640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.976
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sec23/Sec24 protein transport family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sec23/Sec24 protein transport family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular protein transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: clone eighty-four (TAIR:AT3G44340.1); Has 66049 Blast hits to 38054 proteins in 1391 species: Archae - 34; Bacteria - 8764; Metazoa - 33131; Fungi - 9611; Plants - 5387; Viruses - 1213; Other Eukaryotes - 7909 (source: NCBI BLink).
Protein Annotations
BioGrid:14685eggNOG:COG5028eggNOG:KOG1984EMBL:AL022537
EMBL:AL161581EMBL:CP002687EnsemblPlants:AT4G32640EnsemblPlants:AT4G32640.1
EnsemblPlants:AT4G32640.2entrez:829399Gene3D:3.40.20.10Gene3D:3.40.50.410
GeneID:829399Genevisible:Q9M081GO:GO:0000139GO:GO:0005789
GO:GO:0006886GO:GO:0006888GO:GO:0008270GO:GO:0030127
GO:GO:0033116Gramene:AT4G32640.1Gramene:AT4G32640.2hmmpanther:PTHR13803
hmmpanther:PTHR13803:SF4HOGENOM:HOG000196365InParanoid:Q9M081InterPro:IPR002035
InterPro:IPR006895InterPro:IPR006896InterPro:IPR006900InterPro:IPR007123
InterPro:IPR012990InterPro:IPR029006iPTMnet:Q9M081KEGG:ath:AT4G32640
KO:K14007PaxDb:Q9M081Pfam:PF00626Pfam:PF04810
Pfam:PF04811Pfam:PF04815Pfam:PF08033Pfam:Q9M081
PIR:D85383PRIDE:Q9M081PRO:PR:Q9M081ProteinModelPortal:Q9M081
Proteomes:UP000006548Reactome:R-ATH-204005Reactome:R-ATH-5694530Reactome:R-ATH-983170
RefSeq:NP_001119101.5RefSeq:NP_194990.5SMR:Q9M081STRING:3702.AT4G32640.1
SUPFAM:SSF53300SUPFAM:SSF81811SUPFAM:SSF81995SUPFAM:SSF82754
SUPFAM:SSF82919TAIR:AT4G32640UniGene:At.31649UniProt:Q9M081
Coordinates (TAIR10) chr4:+:15742661..15750424
Molecular Weight (calculated) 116298.00 Da
IEP (calculated) 7.92
GRAVY (calculated) -0.27
Length 1080 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVAPVPPGAP RPNSQQNSGP PNFYPGSQGN SNALADNMQN LSLNRPPPMM PGSGPRPPPP FGQSPQPFPQ QSPSYGAPQR GPSPMSRPGP PAGMARPGGP
0101: PPVSQPAGFQ SNVPLNRPTG PPSRQPSFGS RPSMPGGPVA QPAASSSGFP AFGPSGSVAA GPPPGSRPMA FGSPPPVGSG MSMPPSGMIG GPVSNGHQMV
0201: GSGGFPRGTQ FPGAAVTTPQ APYVRPPSAP YARTPPQPLG SHSLSGNPPL TPFTAPSMPP PATFPGAPHG RPAVSGLPYG PPSAQVAPPL GFPGQMQPPR
0301: YGMGPLPNQS MTNIPTAMGQ PGATVPGPSR IDPNQIPRPG SSSSPTVFET RQSNQANPPP PATSDYVVRD TGNCSPRYMR CTINQIPCTV DLLSTSGMQL
0401: ALMVQPLALS HPSEEPIQVV DFGEGGPVRC SRCKGYINPF MKFIDQGRKF ICNFCGYTDE TPRDYHCNLG PDGRRRDVDE RPELCRGTVE FVATKEYMVR
0501: DPMPAVYFFL IDVSMNAIQT GATAAACNAI QQVLSDLPEG PRTFVGIATF DSTIHFYNLK RALQQPLMLI VPDVQDVYTP LETDVVVQLS ECRQHLELLL
0601: DSIPTMFQES KIPESAFGAA VKAAFLAMKS KGGKLMVFQS ILCSVGVGAL SSREAEGRAN MSAGEKEAHK LLQPADKTLK TMAIEFAEYQ VCVDIFITTQ
0701: AYVDMASISV IPRTTGGQVY CYYPFSALSD PPKLYNDLKW NITRPQGFEA VMRVRCSQGI QVQEYSGNFC KRIPTDIDLP AHDDKLQDGA ECAFQCALLY
0801: TTIYGERRIR VTTLSLSCTN MLSNLFRAAD LDSQFACMLK QAANEIPSKA LPLVKEQATN SCINALYAYR KFCATVTSSG QLILPEALKL FPLYTLALTK
0901: SVGLRTDGRI DDRSFWINYV SSLSTPLAIP LVYPRMISVH DLDVKDTEGS VLPPPIPLSG EHISNEGVYF LENGEDGLLF VGESVDSDIL QKLFAVSSAA
1001: EIPNQFVLQQ YDNQLSKKFN DAVNEIRRQR CSYLRIKLCK KGEPSGMLFL SYMVEDRTAS GPSYVEFLVQ VHRQIQLKMN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)