AT1G04140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin family protein / WD-40 repeat family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT5G43930.3); Has 24573 Blast hits to 11855 proteins in 489 species: Archae - 64; Bacteria - 6146; Metazoa - 7827; Fungi - 5629; Plants - 2084; Viruses - 0; Other Eukaryotes - 2823 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1075984..1080321 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85679.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.65 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||
| Length | 790 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTESIWLNDQ SSPRSMIPSA KPVANVHRQR CRSVFKLLVQ REISPNTKFV PRKRWGESRC DADSSCGTTS EPVREQGLNL ISWVEAESLQ HLSAKYCPLV 101: PPPRSTIAAA FSSDGRTLAS THGDHTVKII DCETGKCLKI LTGHRRTPWV VRFHPRHSEI VASGSLDHEV RLWNAKTGEC IRTHDFYRPI ASIAFHAGGE 201: LLAVASGHKL HIWHYNKGGD DSAPAIVLKT RRSLRAVHFH PHGVPLLLTA EVTDIDSSDS AMTRSTSPGY LRYPPPAIFF TNTQSGSRTS LAAELPLVPL 301: PYLLLPSYSA DDPRILYSSG TTGPRNAQTR FQSNQSSVEH GSRTISPSPL PMATSADLSG SYHVPDNSAS NTFATQAGAR NSTTAVDAMD VDEAQPVGRN 401: RVPSQVSSQP DLLEFGQLQQ LFHFRDRGSW ELPFLQGWLM AQSQAGANSV ALPTGSSGHV NSTPYMGSSS ASHSSTASLE AGVASLEIPG GVNLYGVSAR 501: GDSRDRILQS RFAGSGLAEG RSSRNTQHEG ADAQPVVNRI PSELASSIAA AELPCTVKLR VWSHDIKDPC SILKSDKCRL TIHHAVLCSE MGAHFSPCGR 601: YLAACVACVI PHAETDPSLQ TLVQQDSGLA TSPTRHPVTA HQVMYELRVY SLEKESFGSV LVSRAIRAAH CLTSIQFSPT SEHILLAYGR RHGSLLKSIV 701: SDGETTSHFF TVLEIYRVSD MELVRVLPSS EDEVNVACFH PSPGGGLVYG TKEGKLRIFR YNTAAASNLT APNSSPDENL AEVQTYALEC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)