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AT3G33530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.845
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin family protein / WD-40 repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT2G26610.1); Has 166 Blast hits to 141 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XT4ReggNOG:KOG1912EMBL:CP002686EnsemblPlants:AT3G33530
EnsemblPlants:AT3G33530.1entrez:823149ExpressionAtlas:F4JCM5Gene3D:2.130.10.10
GeneID:823149Gramene:AT3G33530.1hmmpanther:PTHR14593InterPro:IPR011047
InterPro:IPR015943PaxDb:F4JCM5PRIDE:F4JCM5ProteinModelPortal:F4JCM5
Proteomes:UP000006548RefSeq:NP_189790.2SMR:F4JCM5STRING:3702.AT3G33530.3
SUPFAM:SSF50998TAIR:AT3G33530UniGene:At.18479UniGene:At.18481
UniProt:F4JCM5
Coordinates (TAIR10) chr3:+:14085354..14093449
Molecular Weight (calculated) 146906.00 Da
IEP (calculated) 6.27
GRAVY (calculated) -0.08
Length 1345 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAASKPSPTD TWDSTLPGPP SRNNFGSADL SPSGLFAFAS GSSVSVVDSR SLQLVSTIPL PPPPGALSPF VTSVRWIPLP LPRDLLSTEP SASHLLLAVA
0101: DRHGRVALVD FHLRSVVVWL NPSSDPKLGI QDLCWVQARH DSHVLAAISG SSFLSLYTTS GGLFWKYDAG TEILSCLRRD PYDSRHFCVL GLKGFLLSVK
0201: VLGDSENDVV IQEMQIKTDF SELPRLEREA ASNGNSSSSS PASAAFPLYF ARFAFSPHWK NILFVTFPRE LLVFDLQYET PLSTTPLPRG CAKFLDILPD
0301: PNKELLYCGH VDGRLSIWRR KEGEQVHVMC TMEEFMPSIG MSIPSPSALA VLLSHSDSTM QTITKIHPDG TSSIDFDNPF DFYDESLLVS KTTFISLSDD
0401: GKIWKWVLSA EGVEDALKNA SDLDMGIGAT EAALPGAIQE NDSSSLDDEL VVAPTNRSRG HTSGSSMEKS DLSFKVGGWK VFGAYTCLLR SMQISLTGQL
0501: QLLSSTVSTL AVPSPSLTAT LARGGNIPAA AVPLVALGTQ SGTIDVVDVS TNAVAASTSV HTGVVRGLRW LGNSRLVSFS YSQVNDKSRG YINRLVVTCL
0601: RSGLNKPFRD LQKPERTPIR ALRTSSSGRY LLILFRDAPV EVWAMTKHPV MLRSLALPFT VVEWTLPAVP RPGQGGPSKQ SLSASEGVTA SGDSWAVIDI
0701: FSASVGSDGS QEETVESFAF ALVNGALGVF EVQGRRIRDF RPKWPSTSFV PSDGLVTAMA YRLPHVVMGD RSGNIRWWDV TTGQSSAFNS HRDGIRRIKF
0801: SPVVAGDRSR GRVAVLFNDN TFSVFDLDSP DPLAQSLLQP QIPGTLVLEL DWLPLRTDKN DPLVLCIAGA DSTFRLVEVT VNEKKAGFVP QSKSVKERFR
0901: PMPMYSPILL PVPHALALRM ILQLGVKPSW FNTSSTTLEK RPHLIRGMAS SSKDLRSYMI QLPPLGDPVV PEMLLKILEP YRKEGCLLDD ERAKLYADVV
1001: KKGYAARFAF AASVFGETSE ALFWLQLPQA IRHLMNKLTR RSPQKISSPT LDSGADEVAM PSKIPSTGLS SPEARKIDSM CDGSLRLMAF EREELRTRAN
1101: ERLPWHEKLD GEDCIQKQVH ELISVGNLEA AVSLLLSSAP DSPYFYPNAL RAVALASAVS KSLLDLALKV VAANMVRTDN SLTGTHLLCA VGRHQEACSQ
1201: LQDSGRWTDA ATLAATHLEG SDYARVLQRW ADHVLHAEHN VWRALILYVA AGSLQEALAA LREVQQPDTV AMFVLACQEI HSEIITELST QDEESESASG
1301: DGTVPLPDLP GLESGKEEVT AVCEYFQQYQ RKLVHLCMDS QPYTD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)