AT1G23230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629); Has 187 Blast hits to 184 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:8244481..8251741 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 180107.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.36 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||
| Length | 1615 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDQSQRTVAA TPSSSRSYQF HPARAAIIDL FNLYLGRGSR QKPDESLRDP PNKSQKRVHA PNRDLPPRNE QFLLDFELLQ SQFNDPEQLR TITESVLISL 0101: VVQCSNHAPR AEFLLFALRT LCRISYINWD TFLPSLLSSV SAAEASLSQG VQAAAATAGS SATSSQSVVP VSVNPTSLLP SAHGIGSPSA SEVKSVENGQ 0201: QIARAGQIVR ENAMRNSQRI RAAAVNSLRQ LSCKIILIGV ESSLKPVTHA EIFQYMMNWL VNWDRRDLGT EDSVGKSWRS EKTLAEWLRS CLDVIWLLVE 0301: EGESRIPFYE LLRSGLQFIE NIPDDEALFT LIMEIHRRRD AMAMHMLMLD QHLHCPSFGT HRIVSQITAN VPPEAVPHLR HSPITYPSVL GEPLYGEDLA 0401: MSIPKGSLDW ERAVRCIRHA IRTTPSPDWW KRVLVVAPCY RPSTQAGPIP GAVFTSDMIC EAIIDRIVEL LKLTNSGNDC FGIDLVSVTF PPLYADANCW 0501: QEWLVFSDIF FFLIKSGCTD FVDFIDKLVL RLNGVDNHIL RTNHVTWLLA QIIRVELVMT ALNSDAKKVE TTRKILSFHR EDRNSDPNNP QSVLLDFVSS 0601: CQNLRIWSLS TTTRAYLNNE QLLKGKQIDE WWRSKGERMM DYMNMDDRSI GMFWVVSYTM AQPACETVIN WLSSAGMAEL PGLQPNDRVM MTQEVTPLPM 0701: SLLSGFSMNL CLKLALQMEE ALFVSQVVPS IAMVETYTRL LLISPHSMFR SHFSQLAQRN ASLLSKPGVT LLVLEILNYR LLPLYRYQGK SKTLMYDVTK 0801: IISALKGKRG DHRIFRLAEN LCMNLILSLR DFFSVKREGK GPTEFTETLN RITIMTLAIT IKTRGIADPD HMVYLQTMLE QILATSQHTW SEKTMRHFPS 0901: LLRETLKGRV DKRGLSIQAW QQAETTVINQ CTQLLSPSAE PAYVSTYLSH SFPQHRQYLC AGACLLMQGH AENINSTNLA RVLREVSPEE VTANIYTLVD 1001: VLLHHVHVDL QQGQSLEAVL DKAGANLAFF FWTHEMLPLD IFLLALIDRD DDPHALIIAM SLLKTPDLLL RIKNYCQNRG SPEHWLVTQV FKRNELQKAL 1101: GNHLSWKDRY PTFFDDIAAR LLPVIPLVLY RLIENNAMEQ ADNLLLAHSH FLAYHPLRFT FVRDILAYFY GHLPGKLVLR MLKVLDLSKI PFSESFPQYI 1201: SPTGAPVCPP LDYFASLLLN LVNNVIPPLS SSSNCSSRSG SMADILNSSA RPPHGKTPGT SQPGPANASE GQKAFYQIQD PGTYTQLVLE TAVIEILSLP 1301: VSAAQIVSSL VQIIVNIQST LIQSGNGFHG AANGVGQGSV LPTSPSGGST DSMSASRSTC LIPGINTASF VSRSGYTCQQ LSCLLIQACG LLLAQLPPDF 1401: HVQLYLEAAR VTRETWWLKD GKRSQGELDS AVGYALMDPT WAAQDNTSTA IGNIVALLHA FFSNLPQEWL DGTNAIITNL RPVTSVAMLR VVFRIMGPLL 1501: PRLASTHTLF NKTLMLLLSA LVDVFGKTAQ TTAPVEASQI ADLIDFLHHI IHYEGQGGAV QTSSKPRPDI LALIGRAAET LRPDVQHLLA HLKTNPNSSI 1601: YAAAHQQNTA KTNTS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)