AT1G64790.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.915 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ILITYHIA | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
ILITYHIA (ILA) is a HEAT repeat protein involved in plant immunity. The gene is also involved in systemic acquired resistance induced by P. syringae expressing avrRps4. Loss-of-function mutants of ILA caused pleiotropic defects in the mutant plants. The mutant plants are smaller in size and the leaves are serrated and yellow to light green in color. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ILITYHIA (ILA); FUNCTIONS IN: binding; INVOLVED IN: systemic acquired resistance, defense response to bacterium; LOCATED IN: cytosol, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); Has 3576 Blast hits to 2493 proteins in 284 species: Archae - 50; Bacteria - 199; Metazoa - 1336; Fungi - 986; Plants - 555; Viruses - 13; Other Eukaryotes - 437 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:24065232..24081908 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 284795.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.16 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.12 | ||||||||||||||||||||||||||||||||||||||||
| Length | 2610 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASPLESLLS ISGSVSTSST LIRLRIFRHD IPEILQNSDM TSDIAPVIVD MIFQTLAIYD DRASRKAVDD LIVKGLGNVT FMKTFAAMLV QVMEKQLKFC 0101: FDTVCYRLLI WSCLLLEKSQ FATVSKNAFV RVASTQASLL RIIMESSFRM RRACKRFMFH LFSQSQAIYS LYMDEVKGSR IPYKDSPELL GLLLEFSCSS 0201: PALFEQSKAI FVDIYVKDVL NSREKQKPNL SNCFKPLLQR LSHEEFQTVI LPAAVKMLKR NPEIVLESVG FLLANVNIDL SKYALELLPV ILPQARHTDE 0301: DRRLGALSMV MCLSEKSSNP DTIEAMFASV KAIIGGSEGR LQSPHQRIGM LNAVQELASA PEGKYIGSLS RTICSFLIAC YKDEGNEDVK LSILSAVASW 0401: ASRSSVAIQP NLVSFIAAGL KEKEALRRGH LRCVRIICRN PDTISQISDL LSPLIQLVKT GFTKAVQRLD GIYALLIVSK IAACDIKAED TMVKEKLWTL 0501: ISQNEPSLVQ ITLASKLSSD DCVVCVDLLE VLLVEHSSRV LEAFSLKSLS QLLLFLLCHP SWNVRKTAYN SVTKIFLATS QLATTLLDEF SDFLSITGDQ 0601: IVSSRTSDAD NPADHQAPFV PSVEVLVKAL IVISSAAVAG PPSSWIVRAI FCSHHPSIVG TGKRDAVWKR LQKCLKTCGF DVATFLSTNG ESVCKSLLGP 0701: MGLTSAKTPE QQAAVYSLST MMSLAPEDTF TVFKMHLQDL PDRLSHDMLS ETDIKIFHTP EGMLLSEQGV YVAQTIGAKY TKQEPSSNHS LKKGLASRET 0801: ANSGRRDTAK LTKKADKGKT AKEEARELML KEEASTRENV HRIQKSLSLV LHALGEMGLA NPVFCHSQLP FLATFLDPLL RSPIVSAAAF ENLVKLARCT 0901: VQPLCNWALE ISTALRLIAI DEVDTSFDFR PSVDKAGKTY EGLFERIVNG LSISCKSGPL PVDTFTFIFP ILERILLSSK RTKLHDDVLQ ILYMHLDPML 1001: PLPRLRMISV LYHVLGVVPA YQASVGPALN ELCLGLQADD VANALYGVYS KDVHVRLACL NAVKCIPAVS KCSLPQNVKI ATNIWIALHD PEKSVAESAD 1101: DLWARYGHDL GTDYSGIFKA LSHINLNVRL AAAEALADAL HESPSSIQLS LSTLFSLYIR DATSGEDVFD AGWIGRQGIA LALQSAADVL TTKDLPAVMT 1201: FLISRALADP NTDVRGKMIN AGIMIIDKHG KENVSLLFPI FENYLNKEAS DEEEYDLVRE GVVIFTGALA KHLARDDPKV HNVVEKLLEV LNTPSESVQR 1301: AVSTCLSPLV LSKQEEAPAL FLRLLDKLMK SDKYGERRGA AFGLAGVVMG FGISSLKKYG LIVTLQEALI DRNSAKRREG ALLAFECLCE KLGKLFEPYV 1401: IKMLPLLLVS FSDQVGAVRE AAECAARAMM SQLSAYGVKL VLPSLLKGLE DKAWRTKQSS VQLLGAMAFC APQQLSQCLP RVVPKLTEVL TDTHPKVQSA 1501: GQLALQQVGS VIKNPEISSL VPTLLLALTD PNEYTRHALD TLLQTTFVNS VDAPSLALLV PIVHRGLRER SSETKKKASQ IVGNMCSLVT EPKDMIPYIG 1601: LLLPEVKKVL VDPIPEVRSV AARAVGSLIR GMGEDNFPDL VPWLFETLKS DTSNVERYGA AQGLSEVIAA LGTDYFENIL PDLIRHCSHQ KASVRDGYLT 1701: LFKFLPRSLG AQFQKYLQLV LPAILDGLAD ENESVRDAAL GAGHVLVEHH ATTSLPLLLP AVEDGIFNDN WRIRQSSVEL LGDLLFKVAG TSGKALLEGG 1801: SDDEGASTEA QGRAIIDILG MDKRNEVLAA LYMVRTDVSL SVRQAALHVW KTIVANTPKT LKEIMPILMS TLISSLASPS SERRQVAGRS LGELVRKLGE 1901: RVLPLIIPIL SKGLKDPDVD KRQGVCIGLN EVMASAGRSQ LLSFMDQLIP TIRTALCDSA LEVRESAGLA FSTLYKSAGL QAMDEIIPTL LEALEDDEMS 2001: TTALDGLKQI ISVRTAAVLP HILPKLVHLP LSALNAHALG ALAEVAGAGF NTHLGTILPA LLSAMGGENK EVQELAQEAA ERVVLVIDEE GVETLLSELL 2101: KGVSDSQASI RRSSAYLIGY FFKSSKLYLI DEAPNMISTL IVMLSDSDST TVAVSWEALA RVIGSVPKEV LPSYIKLVRD AVSTARDKER RKRKGGYVVI 2201: PGLCLPKSLK PLLPVFLQGL ISGSAELREQ AAIGLGELIE VTSEQALKEF VIPITGPLIR IIGDRFPWQV KSAILATLII LIQRGGMALK PFLPQLQTTF 2301: VKCLQDSTRT IRSSAAVALG KLSALSTRID PLVGDLMTSF QAADSGVREA ILSAMRGVIK HAGKSIGPAV RVRIFDLLKD LMHHEDDQVR ISATSMLGVL 2401: SQYLEAAQLS VLLQEVNDLS ASQNWGARHG SVLCISSLLK HNPSTIMTSS LFSSMLNSLK SSLKDEKFPL RESSTKALGR LLLKQLATDP SNTKVVIDVL 2501: SSIVSALHDD SSEVRRRALS SLKAFAKDNP SATMANISVI GPPLAECLKD GNTPVRLAAE RCALHVFQLT KGAENVQAAQ KYITGLDARR LSKFPEQSDD 2601: SESDDDNVSG |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)