AT1G33410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SUPPRESSOR OF AUXIN RESISTANCE1 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SUPPRESSOR OF AUXIN RESISTANCE1 (SAR1); CONTAINS InterPro DOMAIN/s: Nucleoporin Nup120/160 (InterPro:IPR021717); Has 209 Blast hits to 198 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 29; Plants - 47; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:12109769..12118828 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 169296.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.82 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1504 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEENRRNPSA GMEVPVAGGG NVVKWIEISV PSPSVSSSSI GANSSEDNEC VQLPLSEDYA SSSVIGEPSI SFVWRINKTS PNALELLQLS AKSGFPITGL 0101: RFVFAQTLSP FAFVYADEGG DSGRLVYFLY SLTPSGVVYV LKLSNTLAYK SGSVFPLDHL IHLDVRPYLN ESRVTSVAAS PGFIFLGRSD GCVSCFQPIV 0201: YFQKSSGFHQ ELRDDTGFGR LGTVVAAVQD LFISEVHGRN YLCVLHADGA LRVWDILTYS RVLCQSIAAK NLEGVMCVRL WLGKADYDSG IIPLAVLYRK 0301: SMNDSMDVIT VYGLHFSSAE GIALSLDSGL QNIPLEEGEL RDVRFTSDKI WTLKANELTS YMLCQKSSTM EAQSYTLQED YISEQLFLSS RSSSHDLLLT 0401: THSLFSSAKD QIMGFISSIF LRRLLCPGIF HNVALRLTLL DHNKNWTDSE FQSLSLDELT SEILLLVEHE VTAETSISVF HWWKNFCTSY LHHWCSNNEP 0501: RTLLVQSDVI GLVRNNSVSL FFRLENAEHS LGGSSSEHSN LTSLDLGVSH SDHEILAEVL RCTSKISKQW GGAPYAMYYE SITGRPIISS DEIVPRLVNI 0601: LESGYSTTIG QRTWSDLGAD RAWEKELEAH KNLRTFSIDM LLSLSALCQR AGSWEKVFTI MEHYLQYLVP KKSMQKNDGE ALSDICSSIL VQATSQFVKV 0701: MFESAFDIFL LISYLLNIAG QVNMSQQDIC KLRLELLPMI QDIVSEWLII LFFVTTPAES TSMEDFSLKL SSLQIDSSID KRSWNAMLGK CGFSLAFILL 0801: FSDRSCIVDG RFNLRYLPSS QIITSLVQNF ISWIRYSKTG DDSSSLLRRS TELSLRLIRN GQSDAVERIL VVVEASLRGE KTFGCSQDTS GDWCLLQHLR 0901: GCCLLDQVQR GASGILRERK IIDAIRCFFR ASSGEGSWKA LHSLSKEAGF SPATTGPSIL DGSTSSAAWK LHYYEWAMQI FERYNISEGA CQFAYAALEQ 1001: VDDAYNFIEM TEEFDPTKAA TYTRGRLWAN VFKFTLDLNL LNDAYCAIIS NPDEEIKRIC LRRFIIVLFE CGKTKILSDG HLPFIGLTEK ITQELFWKAG 1101: RSDIMMKPNP YKLLYAYEMR RHNWRMAASY MYQFSARLRS EGACKDYKHM SLVLQERLNG LSAAMNALAL VHPGYAWIDP VPEETTRYPV KKARRAEEEQ 1201: LRSNDQPKGE KSCIDIEKLQ NEFVFTTAEY MLSLKNFGWT YSGLEKPPSD LVDLLVQANL YDMAFTVVLK FWRGSALKRE LEKIFENMAI KCCPAKGTLW 1301: SSPNLMLTSN DEEVTHSPDR SPADQGSKLA GDWEILEVYL KRYIDIHARL PVSVASTLLQ ADSCIELPLW LIQMFKDGQK EKALGMAGQE ASPASLFQLY 1401: VDYGRLTEAT NLLLEYMESF ASSVSYDQSV ETKPAEVLKR KKVSGVWFPY TTVERLWWEL EKTMNSGRMV EQCHKLKEQL HHALLNHLKL LKVDSNDAVS 1501: SATG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)