AT4G27010.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:13558943..13568296 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 266645.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.16 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.06 | ||||||||||||||||||||||||||||
| Length | 2374 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASEIAKKFD FKGFAKLAEY NTQGTEKVKK HSTRKAFVGF AISFLEVGKP GLLSSVLNKK EMYSKVLPGL GKDDDDTVAS VLSTLKDKIL VEESLISPGL 0101: RSVLFGIVTL KHLASISARE DAGIVNELAH DVLVKVCTDP SNGLMPDAKR KLRGNSDRLL MLMKGLRAAE IGYHRDLLLA IVRGRPSLAS DFLDEFPYNV 0201: EDFSSPSWFS SISLAANLVS SVRTSCSFDF LNPDQRATPP SGGSDVQTIM KCICPRPFSR SLITKGMLHS DFLVKHGTLR FLLETLRLLD SFLTAWNLCS 0301: SHRCSVEQIQ ISLERNVMGE VSSFFPDSQV LLIVLKSLDG SSGTQKLSLK REAELDSGLV GRKKRIKRSE KDVLEEEAVD IVIGGVGSDK DIFLAEDNMD 0401: AHMTDQEDAE KEYLGIVSDI WISELCSNPI DSVEEAEMCF HIKLLDALKI YVRAVPNELE GSFDIFMKFL SNSFGMPVEL QRALLSLLSE YISWTPKSQS 0501: DRGPTRIPPL MHKHLRVFIN LLLFSPHNGV KDLAYNLAVA AMNSTGAFEN NPSEIGAWFL FLPCFEKIKL PLELQEAVQS MSSVVVSFLC DAVSTVGNNL 0601: FKHWDIVRSS LSHLKGVSIG FSPLIICLLQ KCVRLLNSES KTSLPEKSAI SLYVCSTLKY LLQTQVDSKL LSCLIQSVLS EVVDESKDSL CEWRPLRMLL 0701: CFSQSLSNEK PIILHSRRTT GLPADSSFAE TLDEIKRLVR SISPDEIAGI VKAFSSALIC ATPESILQNF ASVMDVSWAF YGTPFSFLQS ITFLEENFLG 0801: NLSKLSPDLF ASGSEFTGSG NLCEGTVDSE IDFSGHSSVT EEIRSKMDNR DMESSAFSIF LKQAPFPVLL NAIMSMDISC LPEFPRISEL LLLKVSQPKS 0901: GSIDSNIQLI LFWLFQIRSS YKVQPAPVLH QLSEICLRLM KNLFSQISEP ELVSGPSSNK LPASFAKWKH QVAETVLCHP VVMALLESPL DCGTLPPVQN 1001: VEIFSETSLT MGRLVFSEID QHILNLLVST CEHFLFDEKP PNLWKEDLRK NKSIIAFKDL VERLLLEFRV KFELCVGSQS YVSLLQPAQL IHALLRFISP 1101: FKLFNIAHSM LSKIDEEGLT SPNSSIILSL GLGIAGGAFE MLVLYSHQPT AKRGVYDLLW ELEEKNYASN IIEKVYSMAC KFSTSLDLDS ADICLLKVCG 1201: GIFRGKHNQN YAVDPLVLKI SLIVGRTPED LIIHCINRAS ITRAKILFYL VESSPLHLLV FGHFFFSMLS KKQDDSALTD DQFIMLLPAV LSYLTSVIAK 1301: LEKPCNRCLD ITSVYSNILI NGFLQWPRFL ARCIFEEKHE EILLSTTEDM ETMFNASLIG KAVRMFQYHF SLTESPTKED DLFKVFNSMF PLSSTGKEML 1401: DYEIKEVDVQ SVDQILNVAI RVVAKVTVSR ICLFPEDSSM CHLKRAAGTC VKESSSKIGC NRAILSKPLL DALVNSWQCV VKKSDGSFKG NYEGKQDRCW 1501: SLCKSLENFI LRSILQFLES MCEELVQLDS LPFLDRLMKS VLLYRFEDSK TLKILREIFS LLSRGKYSYA PYIQRLIYHS RFTPTISSLS ISSSNTGELF 1601: RPVSSILNHL IILSPDSVRV KRCCLEAPKY AKQLEIVKIL RVLLSNCGKD SGMKELLSDL HFLLLCSYGA TLREIDLEIY KLMHDIKLIE AEQTLNVSET 1701: DYLWGKAALK IREGLSQDAS DVCQVDLVED VRQGLIKENL CVDPKICALT VLFFPYQRTT EKSENFYLYD DPINEVPVFS FNFQLIVLGY IEPVEFASLG 1801: LLAVAFVSMS SADLGMRKLG YETLQIFLDA LENCRKNKHV TGLRLLLMYV QNGVEEPWQR IPTVSAIFAA ETSMILLDPS HEHYVPINKL LKSSSTLKLR 1901: GIPLFHDFFW SSAVNFRSQR FWELRLVYLG LKSDDDVQIY IKNSILETVI SFSSSPLADD ETKRLILQVV RKSVKFHKIA RHLVENCGLF SWCSSFISNF 2001: TTKPIGDKDL HLVVVLEIIT DVLASRNITE WLQRFGLEGL MEISSRLYKL LGGGLVSVQE NGTSVDLILQ ILSATLKISQ KRNMYQPHFT ITIEGIFQLF 2101: EGVANFGSPQ VEASAESGLI TILMSTPPVD ILCMDVDKLR RFLLWGTSTA LKSDFKKGSK PSESHEDTKI LIEGPQEETM VAKFLRWLSA SVILGKSYSK 2201: ASDSDPTFLS KTKPETLLTS LEYFKKRNLE DSMQNSEHII GEVIVHLQQF LSTNYMFLLP SVVFALSLML LHNDLGTGES DGDYKLIKSL CSKISSPPEA 2301: IPGWRWSYYQ AWRDLSSEQA TDLDKINELH ACQHLLLIFS AMLGETPQES QQVLLRKSFD MSHVFEWERS LVET |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)