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AT4G27010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR9WeggNOG:KOG1791EMBL:CP002687EnsemblPlants:AT4G27010
EnsemblPlants:AT4G27010.1entrez:828809ExpressionAtlas:F4JVU6GeneID:828809
Gramene:AT4G27010.1hmmpanther:PTHR13500InterPro:IPR021714InterPro:IPR032436
iPTMnet:F4JVU6ncoils:CoilPaxDb:F4JVU6Pfam:PF11707
Pfam:PF16201PRIDE:F4JVU6ProteinModelPortal:F4JVU6Proteomes:UP000006548
RefSeq:NP_194431.3STRING:3702.AT4G27010.2TAIR:AT4G27010UniGene:At.54525
UniProt:F4JVU6
Coordinates (TAIR10) chr4:+:13558943..13568296
Molecular Weight (calculated) 266645.00 Da
IEP (calculated) 6.16
GRAVY (calculated) 0.06
Length 2374 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASEIAKKFD FKGFAKLAEY NTQGTEKVKK HSTRKAFVGF AISFLEVGKP GLLSSVLNKK EMYSKVLPGL GKDDDDTVAS VLSTLKDKIL VEESLISPGL
0101: RSVLFGIVTL KHLASISARE DAGIVNELAH DVLVKVCTDP SNGLMPDAKR KLRGNSDRLL MLMKGLRAAE IGYHRDLLLA IVRGRPSLAS DFLDEFPYNV
0201: EDFSSPSWFS SISLAANLVS SVRTSCSFDF LNPDQRATPP SGGSDVQTIM KCICPRPFSR SLITKGMLHS DFLVKHGTLR FLLETLRLLD SFLTAWNLCS
0301: SHRCSVEQIQ ISLERNVMGE VSSFFPDSQV LLIVLKSLDG SSGTQKLSLK REAELDSGLV GRKKRIKRSE KDVLEEEAVD IVIGGVGSDK DIFLAEDNMD
0401: AHMTDQEDAE KEYLGIVSDI WISELCSNPI DSVEEAEMCF HIKLLDALKI YVRAVPNELE GSFDIFMKFL SNSFGMPVEL QRALLSLLSE YISWTPKSQS
0501: DRGPTRIPPL MHKHLRVFIN LLLFSPHNGV KDLAYNLAVA AMNSTGAFEN NPSEIGAWFL FLPCFEKIKL PLELQEAVQS MSSVVVSFLC DAVSTVGNNL
0601: FKHWDIVRSS LSHLKGVSIG FSPLIICLLQ KCVRLLNSES KTSLPEKSAI SLYVCSTLKY LLQTQVDSKL LSCLIQSVLS EVVDESKDSL CEWRPLRMLL
0701: CFSQSLSNEK PIILHSRRTT GLPADSSFAE TLDEIKRLVR SISPDEIAGI VKAFSSALIC ATPESILQNF ASVMDVSWAF YGTPFSFLQS ITFLEENFLG
0801: NLSKLSPDLF ASGSEFTGSG NLCEGTVDSE IDFSGHSSVT EEIRSKMDNR DMESSAFSIF LKQAPFPVLL NAIMSMDISC LPEFPRISEL LLLKVSQPKS
0901: GSIDSNIQLI LFWLFQIRSS YKVQPAPVLH QLSEICLRLM KNLFSQISEP ELVSGPSSNK LPASFAKWKH QVAETVLCHP VVMALLESPL DCGTLPPVQN
1001: VEIFSETSLT MGRLVFSEID QHILNLLVST CEHFLFDEKP PNLWKEDLRK NKSIIAFKDL VERLLLEFRV KFELCVGSQS YVSLLQPAQL IHALLRFISP
1101: FKLFNIAHSM LSKIDEEGLT SPNSSIILSL GLGIAGGAFE MLVLYSHQPT AKRGVYDLLW ELEEKNYASN IIEKVYSMAC KFSTSLDLDS ADICLLKVCG
1201: GIFRGKHNQN YAVDPLVLKI SLIVGRTPED LIIHCINRAS ITRAKILFYL VESSPLHLLV FGHFFFSMLS KKQDDSALTD DQFIMLLPAV LSYLTSVIAK
1301: LEKPCNRCLD ITSVYSNILI NGFLQWPRFL ARCIFEEKHE EILLSTTEDM ETMFNASLIG KAVRMFQYHF SLTESPTKED DLFKVFNSMF PLSSTGKEML
1401: DYEIKEVDVQ SVDQILNVAI RVVAKVTVSR ICLFPEDSSM CHLKRAAGTC VKESSSKIGC NRAILSKPLL DALVNSWQCV VKKSDGSFKG NYEGKQDRCW
1501: SLCKSLENFI LRSILQFLES MCEELVQLDS LPFLDRLMKS VLLYRFEDSK TLKILREIFS LLSRGKYSYA PYIQRLIYHS RFTPTISSLS ISSSNTGELF
1601: RPVSSILNHL IILSPDSVRV KRCCLEAPKY AKQLEIVKIL RVLLSNCGKD SGMKELLSDL HFLLLCSYGA TLREIDLEIY KLMHDIKLIE AEQTLNVSET
1701: DYLWGKAALK IREGLSQDAS DVCQVDLVED VRQGLIKENL CVDPKICALT VLFFPYQRTT EKSENFYLYD DPINEVPVFS FNFQLIVLGY IEPVEFASLG
1801: LLAVAFVSMS SADLGMRKLG YETLQIFLDA LENCRKNKHV TGLRLLLMYV QNGVEEPWQR IPTVSAIFAA ETSMILLDPS HEHYVPINKL LKSSSTLKLR
1901: GIPLFHDFFW SSAVNFRSQR FWELRLVYLG LKSDDDVQIY IKNSILETVI SFSSSPLADD ETKRLILQVV RKSVKFHKIA RHLVENCGLF SWCSSFISNF
2001: TTKPIGDKDL HLVVVLEIIT DVLASRNITE WLQRFGLEGL MEISSRLYKL LGGGLVSVQE NGTSVDLILQ ILSATLKISQ KRNMYQPHFT ITIEGIFQLF
2101: EGVANFGSPQ VEASAESGLI TILMSTPPVD ILCMDVDKLR RFLLWGTSTA LKSDFKKGSK PSESHEDTKI LIEGPQEETM VAKFLRWLSA SVILGKSYSK
2201: ASDSDPTFLS KTKPETLLTS LEYFKKRNLE DSMQNSEHII GEVIVHLQQF LSTNYMFLLP SVVFALSLML LHNDLGTGES DGDYKLIKSL CSKISSPPEA
2301: IPGWRWSYYQ AWRDLSSEQA TDLDKINELH ACQHLLLIFS AMLGETPQES QQVLLRKSFD MSHVFEWERS LVET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)