AT3G06530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: protein binding; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar RNA-associated protein 10 (InterPro:IPR022125), BP28, C-terminal (InterPro:IPR012954), Armadillo-type fold (InterPro:IPR016024); Has 648 Blast hits to 415 proteins in 193 species: Archae - 0; Bacteria - 6; Metazoa - 222; Fungi - 268; Plants - 71; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2022596..2033637 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 246336.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.03 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.04 | ||||||||||||||||||||||||||||||||||||||||
| Length | 2197 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSSSIVSQLQ ALKSVLQADT EPSKRPFTRP SILFSPKEAA DFDIESIYEL GLKGLEVLGN KDERFKNYMN DLFSHKSKEI DRELLGKEEN ARIDSSISSY 0101: LRLLSGYLQF RASLETLEYL IRRYKIHIYN LEDVVLCALP YHDTHAFVRI VQLLSTGNSK WKFLDGVKNS GAPPPRSVIV QQCIRDKQVL EALCDYASRT 0201: KKYQPSKPVV SFSTAVVVGV LGSVPTVDGD IVKTILPFVD SGLQSGVKGC LDQQAGALMV VGMLANRAVL NTNLIKRLMR SIIDIGREHA KESSDPHSLR 0301: LSLMALINFV QLQSVDLIPR KALDLFNEIR DISGVLLGLS KEFNIKRFLA VLLDSLLFYS SSDDKCCEVL ASIIETVPVS NLVDHLISKV FSLCMTQYQK 0401: NSDFRSSTSG SWAKKFLVVV SKKYPAELRA AVPKFLEATE VQSKKEDLKL EMLSCMLDGN SDMSHPFVDS KLWFRLHHPR AAVRCAALSS LNGVLKDDSS 0501: KAENLVTIQD AILRQLWDDD LAVVQAALSF DKLPNIITSS GLLDALLHVV KRCVGILVSG VSHNVQLAVD VVALSLKIAV SSFGNQTDST EKVTSAMFPF 0601: LLIQPKTWNL NLLVLKLGKD VNWPLFKNLA ADDGMKKLPD IMSTNLSSIS MDIINDLGEA LSLDPDERRI ELIERACNYK LSEVLETCSN IKCSEQDRNK 0701: LQKGLLIRES VSALNIDVIN KLVEAFMMHP ADYIQWLTVS CRDSTLSKTL FYMILMHSLQ KMNSSSDPSQ LLDLFELCFP VLKTEWEELE VEVDVSLKEL 0801: SKSNCQELLY QLLDTSDFTA LNSKVLICLF WKLGESFIKL EPAHDASVLN KRLSSGLEDL FFFFATTRLR HVFKEHLHFR VREAKVCPVL FLSRLISRED 0901: VPPLVQIESL RCFSYLCSSG NNEWLIQVFS SFPVLLVPMS SDNQDVKAAA INCIEALFNL RAAIYGSSFD ELLGMIVQQR RLILSDNKFF ASYLTSLLSS 1001: TTNDLLVPVG LQKRFDQSTK ENILSVILLC AEDLPAYGKL RVLSLLKDLG IMLMRDEIVK LLSQLLDKRS QYYYKLDKTS QPLSDTEVDL LCLLLECSMM 1101: RTSSFKGQSL DDHILSALNV DCMASERPAV ISPCLTILEK LSNRFYDELQ TDVQIRFFHK LVSMFRSSNG SIQNGAKEAV LRLKLSSSTV VLALDRITQQ 1201: DTLVIGSLSK KKKQKKNSKS CPEEDINSEE FRSGEKALSF IASLLDMLLL KKDLTHRESL IRPLFKLLQR SMSKEWVKIA FSIEETSLQP PQDVRETTPT 1301: FISSIQQTLL LILKDIFDSL NMNPLKAEVA NEINVKMLVE LAHSSNDGVT RNHIFSLFTA IVKFVPDKVL DHIISILTLV GESTVTQIDS HSKSIFEGFI 1401: SMVIPFWLSK TKSEEQLLQI FVKVLPDIVE HRRRSIVAYL LGVIGERNGL PALLVLLFKS LISRKDSAWL GNANVSESFA SIVKKEWEYS FAMEICEQYS 1501: SSTWLSSLVI LLQTISKDSK QCFLQMRLVL EFVFQKLQDP EFAFAVSLEP RNNVSVGIQQ ELQELMKCCI CLLQAIDAKK EKDVTSSVRN EIRMRIHDVL 1601: MTVTGAMDLS IYFRVVTSLL QQQTDYNGTK KVLGLISERA KDTSSSKMKH KRKISNQKGR NSWLNLDEVA VDSFGKMCEE IVHLINATDD ESGVPVKRAA 1701: ISTLEVLAGR FPSGHPIFRK CLAAVAECIS SKNLGVSSSC LRTTGALINV LGPKALIELP CIMKNLVKQS LEVSFASQSG RNATAEEQLL MLSVLVTLEA 1801: VIDKLGGFLN PHLGDIMKIM VLHPEYVSDF DKNLKSKANA IRRLLTDKIP VRLTLQPLLR IYNEAVSSGN ASLVIAFNML EDLVVKMDRS SIVSSHGKIF 1901: DQCLVALDIR RLNPAAIQNI DDAERSVTSA MVALTKKLTE SEFRPLFIRS IDWAESDVVD GSGSENKSID RAISFYGLVD RLCESHRSIF VPYFKYVLDG 2001: IVAHLTTAEA SVSTRKKKKA KIQQTSDSIQ PKSWHLRALV LSCLKNCFLH DTGSLKFLDT NNFQVLLKPI VSQLVVEPPS SLKEHPHVPS VDEVDDLLVS 2101: CIGQMAVASG SDLLWKPLNH EVLMQTRSES VRSRMLSLRS VKQMLDNLKE EYLVLLAETI PFLAELLEDV ELSVKSLAQD IIKQMEEMSG ESLAEYL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)