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AT3G06530.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: protein binding; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar RNA-associated protein 10 (InterPro:IPR022125), BP28, C-terminal (InterPro:IPR012954), Armadillo-type fold (InterPro:IPR016024); Has 648 Blast hits to 415 proteins in 193 species: Archae - 0; Bacteria - 6; Metazoa - 222; Fungi - 268; Plants - 71; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Protein Annotations
BioGrid:5166eggNOG:ENOG410XNQQeggNOG:KOG1837EMBL:AC020580
EMBL:AK221804EMBL:CP002686EnsemblPlants:AT3G06530EnsemblPlants:AT3G06530.1
entrez:819831ExpressionAtlas:Q9C8Z4GeneID:819831Genevisible:Q9C8Z4
GO:GO:0005730GO:GO:0006364GO:GO:0030529hmmpanther:PTHR13457
hmmpanther:PTHR13457:SF1InParanoid:Q9C8Z4IntAct:Q9C8Z4InterPro:IPR012954
InterPro:IPR016024InterPro:IPR022125ncoils:CoilPaxDb:Q9C8Z4
Pfam:PF08146Pfam:PF12397Pfam:Q9C8Z4PRIDE:Q9C8Z4
PRO:PR:Q9C8Z4ProteinModelPortal:Q9C8Z4Proteomes:UP000006548RefSeq:NP_187305.5
SMART:SM01036STRING:3702.AT3G06530.2SUPFAM:SSF48371TAIR:AT3G06530
UniGene:At.46312UniProt:Q9C8Z4
Coordinates (TAIR10) chr3:+:2022596..2033637
Molecular Weight (calculated) 246336.00 Da
IEP (calculated) 7.03
GRAVY (calculated) 0.04
Length 2197 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSSSIVSQLQ ALKSVLQADT EPSKRPFTRP SILFSPKEAA DFDIESIYEL GLKGLEVLGN KDERFKNYMN DLFSHKSKEI DRELLGKEEN ARIDSSISSY
0101: LRLLSGYLQF RASLETLEYL IRRYKIHIYN LEDVVLCALP YHDTHAFVRI VQLLSTGNSK WKFLDGVKNS GAPPPRSVIV QQCIRDKQVL EALCDYASRT
0201: KKYQPSKPVV SFSTAVVVGV LGSVPTVDGD IVKTILPFVD SGLQSGVKGC LDQQAGALMV VGMLANRAVL NTNLIKRLMR SIIDIGREHA KESSDPHSLR
0301: LSLMALINFV QLQSVDLIPR KALDLFNEIR DISGVLLGLS KEFNIKRFLA VLLDSLLFYS SSDDKCCEVL ASIIETVPVS NLVDHLISKV FSLCMTQYQK
0401: NSDFRSSTSG SWAKKFLVVV SKKYPAELRA AVPKFLEATE VQSKKEDLKL EMLSCMLDGN SDMSHPFVDS KLWFRLHHPR AAVRCAALSS LNGVLKDDSS
0501: KAENLVTIQD AILRQLWDDD LAVVQAALSF DKLPNIITSS GLLDALLHVV KRCVGILVSG VSHNVQLAVD VVALSLKIAV SSFGNQTDST EKVTSAMFPF
0601: LLIQPKTWNL NLLVLKLGKD VNWPLFKNLA ADDGMKKLPD IMSTNLSSIS MDIINDLGEA LSLDPDERRI ELIERACNYK LSEVLETCSN IKCSEQDRNK
0701: LQKGLLIRES VSALNIDVIN KLVEAFMMHP ADYIQWLTVS CRDSTLSKTL FYMILMHSLQ KMNSSSDPSQ LLDLFELCFP VLKTEWEELE VEVDVSLKEL
0801: SKSNCQELLY QLLDTSDFTA LNSKVLICLF WKLGESFIKL EPAHDASVLN KRLSSGLEDL FFFFATTRLR HVFKEHLHFR VREAKVCPVL FLSRLISRED
0901: VPPLVQIESL RCFSYLCSSG NNEWLIQVFS SFPVLLVPMS SDNQDVKAAA INCIEALFNL RAAIYGSSFD ELLGMIVQQR RLILSDNKFF ASYLTSLLSS
1001: TTNDLLVPVG LQKRFDQSTK ENILSVILLC AEDLPAYGKL RVLSLLKDLG IMLMRDEIVK LLSQLLDKRS QYYYKLDKTS QPLSDTEVDL LCLLLECSMM
1101: RTSSFKGQSL DDHILSALNV DCMASERPAV ISPCLTILEK LSNRFYDELQ TDVQIRFFHK LVSMFRSSNG SIQNGAKEAV LRLKLSSSTV VLALDRITQQ
1201: DTLVIGSLSK KKKQKKNSKS CPEEDINSEE FRSGEKALSF IASLLDMLLL KKDLTHRESL IRPLFKLLQR SMSKEWVKIA FSIEETSLQP PQDVRETTPT
1301: FISSIQQTLL LILKDIFDSL NMNPLKAEVA NEINVKMLVE LAHSSNDGVT RNHIFSLFTA IVKFVPDKVL DHIISILTLV GESTVTQIDS HSKSIFEGFI
1401: SMVIPFWLSK TKSEEQLLQI FVKVLPDIVE HRRRSIVAYL LGVIGERNGL PALLVLLFKS LISRKDSAWL GNANVSESFA SIVKKEWEYS FAMEICEQYS
1501: SSTWLSSLVI LLQTISKDSK QCFLQMRLVL EFVFQKLQDP EFAFAVSLEP RNNVSVGIQQ ELQELMKCCI CLLQAIDAKK EKDVTSSVRN EIRMRIHDVL
1601: MTVTGAMDLS IYFRVVTSLL QQQTDYNGTK KVLGLISERA KDTSSSKMKH KRKISNQKGR NSWLNLDEVA VDSFGKMCEE IVHLINATDD ESGVPVKRAA
1701: ISTLEVLAGR FPSGHPIFRK CLAAVAECIS SKNLGVSSSC LRTTGALINV LGPKALIELP CIMKNLVKQS LEVSFASQSG RNATAEEQLL MLSVLVTLEA
1801: VIDKLGGFLN PHLGDIMKIM VLHPEYVSDF DKNLKSKANA IRRLLTDKIP VRLTLQPLLR IYNEAVSSGN ASLVIAFNML EDLVVKMDRS SIVSSHGKIF
1901: DQCLVALDIR RLNPAAIQNI DDAERSVTSA MVALTKKLTE SEFRPLFIRS IDWAESDVVD GSGSENKSID RAISFYGLVD RLCESHRSIF VPYFKYVLDG
2001: IVAHLTTAEA SVSTRKKKKA KIQQTSDSIQ PKSWHLRALV LSCLKNCFLH DTGSLKFLDT NNFQVLLKPI VSQLVVEPPS SLKEHPHVPS VDEVDDLLVS
2101: CIGQMAVASG SDLLWKPLNH EVLMQTRSES VRSRMLSLRS VKQMLDNLKE EYLVLLAETI PFLAELLEDV ELSVKSLAQD IIKQMEEMSG ESLAEYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)