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AT3G24120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G13640.1); Has 1710 Blast hits to 1694 proteins in 69 species: Archae - 0; Bacteria - 2; Metazoa - 34; Fungi - 0; Plants - 1651; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJU8eggNOG:ENOG410YGB1EMBL:AY050355EMBL:AY088428
EMBL:AY094046EMBL:CP002686EnsemblPlants:AT3G24120EnsemblPlants:AT3G24120.1
entrez:821998ExpressionAtlas:Q94A57Gene3D:1.10.10.60GeneID:821998
GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355
Gramene:AT3G24120.1hmmpanther:PTHR31499hmmpanther:PTHR31499:SF6HOGENOM:HOG000239390
IntAct:Q94A57InterPro:IPR001005InterPro:IPR006447InterPro:IPR009057
InterPro:IPR017930InterPro:IPR025756KEGG:ath:AT3G24120ncoils:Coil
Pfam:PF00249Pfam:PF14379Pfscan:PS51294PhylomeDB:Q94A57
PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_566744.1SMR:Q94A57
STRING:3702.AT3G24120.2SUPFAM:SSF46689TAIR:AT3G24120TIGRfam:TIGR01557
TIGRFAMs:TIGR01557UniGene:At.26588UniProt:Q94A57
Coordinates (TAIR10) chr3:-:8705925..8708148
Molecular Weight (calculated) 32207.20 Da
IEP (calculated) 7.18
GRAVY (calculated) -0.51
Length 295 amino acids
Sequence (TAIR10)
(BLAST)
001: MYSAIRSLPL DGGHVGGDYH GPLDGTNLPG DACLVLTTDP KPRLRWTTEL HERFVDAVTQ LGGPDKATPK TIMRTMGVKG LTLYHLKSHL QKFRLGRQAG
101: KESTENSKDA SCVGESQDTG SSSTSSMRMA QQEQNEGYQV TEALRAQMEV QRRLHDQLEV QRRLQLRIEA QGKYLQSILE KACKAFDEQA ATFAGLEAAR
201: EELSELAIKV SNSSQGTSVP YFDATKMMMM PSLSELAVAI DNKNNITTNC SVESSLTSIT HGSSISAASM KKRQRGDNLG VGYESGWIMP SSTIG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)