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AT3G59380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.929
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : farnesyltransferase A
Curator
Summary (TAIR10)
Encodes the alpha-subunit shared between protein farnesyltransferase and protein geranylgeranyltransferase-I. Involved in protein prenylation: covalent attachment of the C-15 isoprene farnesyl or the C-20 isoprene geranylgeranyl groups to the C-terminal end of some proteins. Involved in shoot and flower meristem homeostasis, and response to ABA and drought. Also regulates leaf cell shape. Mutant is epistatic to era1.
Computational
Description (TAIR10)
farnesyltransferase A (FTA); CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase alpha subunit 1 (TAIR:AT4G24490.2); Has 1351 Blast hits to 1070 proteins in 249 species: Archae - 32; Bacteria - 58; Metazoa - 584; Fungi - 296; Plants - 191; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5536eggNOG:KOG0530EMBL:BT033079EnsemblPlants:AT3G59380
EnsemblPlants:AT3G59380.1entrez:825107ExpressionAtlas:B3LF91GeneID:825107
GO:GO:0008318GO:GO:0018342Gramene:AT3G59380.1gramene_pathway:2.5.1.29
gramene_pathway:PWY-5120gramene_pathway:PWY-5805-ARAgramene_plant_reactome:1119545gramene_plant_reactome:6875908
hmmpanther:PTHR11129hmmpanther:PTHR11129:SF1InterPro:IPR002088KEGG:ath:AT3G59380
KO:K05955OMA:WHFRRLIPaxDb:B3LF91Pfam:PF01239
Pfam:Q9LX33Pfscan:PS51147PRIDE:B3LF91PROSITE:PS51147
ProteinModelPortal:B3LF91RefSeq:NP_567084.1SMR:B3LF91STRING:3702.AT3G59380.1
SUPFAM:SSF48439TAIR:AT3G59380tair10-symbols:ATFTAtair10-symbols:FTA
tair10-symbols:PFT/PGGT-IALPHAtair10-symbols:PLPUniGene:At.1520UniProt:B3LF91
UniProt:Q9LX33
Coordinates (TAIR10) chr3:+:21944209..21945781
Molecular Weight (calculated) 37986.60 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.45
Length 326 amino acids
Sequence (TAIR10)
(BLAST)
001: MNFDETVPLS QRLEWSDVVP LTQDDGPNPV VPIAYKEEFR ETMDYFRAIY FSDERSPRAL RLTEETLLLN SGNYTVWHFR RLVLEALNHD LFEELEFIER
101: IAEDNSKNYQ LWHHRRWVAE KLGPDVAGRE LEFTRRVLSL DAKHYHAWSH RQWTLRALGG WEDELDYCHE LLEADVFNNS AWNQRYYVIT QSPLLGGLEA
201: MRESEVSYTI KAILTNPANE SSWRYLKALY KDDKESWISD PSVSSVCLNV LSRTDCFHGF ALSTLLDLLC DGLRPTNEHK DSVRALANEE PETNLANLVC
301: TILGRVDPVR ANYWAWRKSK ITVAAI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)