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AT3G10770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Single-stranded nucleic acid binding R3H protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Single-stranded nucleic acid binding R3H protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Single-stranded nucleic acid binding R3H (InterPro:IPR001374); BEST Arabidopsis thaliana protein match is: Single-stranded nucleic acid binding R3H protein (TAIR:AT5G05100.1); Has 376 Blast hits to 376 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 60; Plants - 124; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZICFeggNOG:KOG2953EMBL:AC011708EMBL:AK226352
EMBL:CP002686EnsemblPlants:AT3G10770EnsemblPlants:AT3G10770.1entrez:820246
ExpressionAtlas:Q9SG83Gene3D:3.30.1370.50GeneID:820246GO:GO:0003676
Gramene:AT3G10770.1hmmpanther:PTHR15672hmmpanther:PTHR15672:SF15InterPro:IPR001374
InterPro:IPR024771KEGG:ath:AT3G10770ncoils:CoilOMA:ISTRDSC
Pfam:PF01424Pfam:PF12752Pfscan:PS51061Pfscan:PS51673
PhylomeDB:Q9SG83PROSITE:PS51061PROSITE:PS51673Proteomes:UP000006548
RefSeq:NP_566381.1SMART:SM00393SMR:Q9SG83STRING:3702.AT3G10770.1
SUPFAM:SSF82708TAIR:AT3G10770UniGene:At.21804UniProt:Q9SG83
Coordinates (TAIR10) chr3:-:3372461..3374026
Molecular Weight (calculated) 37536.00 Da
IEP (calculated) 8.09
GRAVY (calculated) -0.72
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MASMTEKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ NPEQLQFEFP PFPTSYLRLA AHRVAQHYGL VTMALDNGTG AGDGSDNRIL VTKTAESRFP
101: YVCLSEIPVK QPENGRPEGF KIAIKPRPKR GSGCGGSGSG VQQNLLRSVE ERKEEYDKAR ARIFNSPSSS DSEDSSSLRP PSLEVRNTCI NRNETEVAVN
201: NSPVDAVTRD SGRTSRVAII RDREKDRYDP DYDRSYDRYV VDPAYRYVRV MPSGQSFSPM PIHIPFHDGF FPHMPRGHQA NLNYGHPLNP ALSPFTHNVA
301: SYTPWPNSPV MNYAQPLNGS DTNLYRYPSA SNP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)