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AT1G19680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G75400.1); Has 470 Blast hits to 325 proteins in 82 species: Archae - 0; Bacteria - 69; Metazoa - 71; Fungi - 25; Plants - 165; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).
Protein Annotations
EMBL:AC007797EMBL:BT029170EMBL:CP002684EMBL:DQ059098
EnsemblPlants:AT1G19680EnsemblPlants:AT1G19680.1entrez:838555Gene3D:3.30.40.10
GeneID:838555GO:GO:0008270Gramene:AT1G19680.1hmmpanther:PTHR31150
hmmpanther:PTHR31150:SF8HOGENOM:HOG000237740IntAct:Q9FXG6InterPro:IPR001841
InterPro:IPR013083KEGG:ath:AT1G19680OMA:DIMDIPTPfscan:PS50089
PhylomeDB:Q9FXG6PIR:F86329PROSITE:PS50089Proteomes:UP000006548
RefSeq:NP_173398.2SMART:SM00184SMR:Q9FXG6STRING:3702.AT1G19680.1
SUPFAM:SSF57850TAIR:AT1G19680UniGene:At.41738UniGene:At.68550
UniProt:Q9FXG6
Coordinates (TAIR10) chr1:+:6805909..6807682
Molecular Weight (calculated) 47977.90 Da
IEP (calculated) 9.27
GRAVY (calculated) -0.58
Length 444 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSVCCVAAK DRNVPSGAID NSVCSPSWSF RRDNRRRVAD EIKDSSNHNV GSRGIDIDKL SLGLERGPPS SETGGLATLG SQKSADSEMG TASMVTAPLA
101: GTSLAIRSPS DVSLASPVRV EVKNIVDSSD IVSSVLPNPS SSTSVSDLPS AHTHSLPPRS TPSRRARGSP GQQLFRQVSD SQTLGLKSPN NYSTSEGRSS
201: FVLSTCSNDT ATGSHFASSE GGWSINAFCE LVAQSQRERW SFDNEHLGSG RRRLSGCSSS RFSCSPSVDQ QTCGRCSKLL TERSPVARFD LPIPAVLACG
301: HVYHAACLET MTNETEKYDP TCPICTETQV TKLSRKALKA EAELKATSYK RCKNRVVDSY VRSECEDLMF QNLGKREGKG LKMDPSSNTK GSTSKSFMKW
401: HFGSVSTKWS KARDSTSKKS FWSRHSNKRL SHSFSSVEGL NQAT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)