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AT4G17730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : syntaxin of plants 23
Curator
Summary (TAIR10)
member of SYP2 Gene Family
Computational
Description (TAIR10)
syntaxin of plants 23 (SYP23); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: intracellular protein transport, cellular membrane fusion; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT5G46860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:12787eggNOG:COG5325eggNOG:KOG0811EMBL:AL161547
EMBL:AY074294EMBL:BT000708EMBL:BT008517EMBL:CP002687
EMBL:U85036EMBL:Z97344EnsemblPlants:AT4G17730EnsemblPlants:AT4G17730.1
entrez:827494ExpressionAtlas:O04378GeneID:827494Genevisible:O04378
GO:GO:0005622GO:GO:0006886GO:GO:0016021GO:GO:0016192
GO:GO:0061025hmmpanther:PTHR19957hmmpanther:PTHR19957:SF120HOGENOM:HOG000188453
InParanoid:O04378InterPro:IPR000727InterPro:IPR006011InterPro:IPR006012
InterPro:IPR010989PaxDb:O04378Pfam:O04378Pfam:PF00804
Pfam:PF14523Pfscan:PS50192PhylomeDB:O04378PIR:H85198
PRIDE:O04378PRO:PR:O04378PROSITE:PS00914PROSITE:PS50192
ProteinModelPortal:O04378Proteomes:UP000006548RefSeq:NP_567537.1scanprosite:PS00914
SMART:SM00397SMART:SM00503SMR:O04378STRING:3702.AT4G17730.2
SUPFAM:SSF47661TAIR:AT4G17730tair10-symbols:ATSYP23tair10-symbols:SYP23
UniGene:At.4498UniGene:At.54UniProt:O04378
Coordinates (TAIR10) chr4:+:9865351..9866635
Molecular Weight (calculated) 28605.80 Da
IEP (calculated) 6.93
GRAVY (calculated) -0.66
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFQDLEAGR GRSLASSRNI NGGGSRQDTT QDVASGIFQI NTSVSTFHRL VNTLGTPKDT PELREKLHKT RLYIGQLVKD TSAKLKEASE TDHQRGVNQK
101: KKIVDAKLAK DFQAVLKEFQ KAQRLAAERE TVYAPLVHKP SLPSSYTSSE IDVNGDKHPE QRALLVESKR QELVLLDNEI AFNEAVIEER EQGIQEIQQQ
201: IGEVHEIFKD LAVLVHDQGN MIDDIGTHID NSYAATAQGK SHLVRHQRHK DQILL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)