AT3G60300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RWD domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RWD domain-containing protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Zinc finger, RING-type (InterPro:IPR001841), RWD (InterPro:IPR006575); Has 305 Blast hits to 305 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 10; Plants - 42; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:22285371..22287382 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41221.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.37 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.81 | ||||||||||||||||||||||||||||||||||||
| Length | 366 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTEEEVAMEV EALEAVYSED CVILDSYPPH LHLHIKPRTA EISSQQFVEA VVRFQAGSKY PDEPPRISLI ESKGLDEQRQ KLLIGIVQEK ASQLSSSLML 101: VELCEEAVER LTIMNHPEGD CPLCLYPLFP EDGGSKQMPF MKLMSCFHCF HCECIIRWWN WLHAQEEADS KSGDTLHMRR GSTAREGNSG SADKSLGNCP 201: VCRKIFHSSD IEHVLDLVGA QSSLQDSSLI PGKDQDPLLQ SDSENIRRER FESILKTQEE KGGLVQPKKN ISVVPGMYLP PPAHASTSRN EEEEAGESQE 301: QGEEEPKEAE SETNSSSSTN RRGRGRWRGR GRSRGRGPTV NERKPNSQDP RKPTRQWVQR AREGDK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)