AT1G26665.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||
| Experimental Localisations and PPI |
|
||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||
| Description (TAIR10) | protein_coding : Mediator complex, subunit Med10 | ||||||||
| Curator Summary (TAIR10) |
|||||||||
| Computational Description (TAIR10) |
Mediator complex, subunit Med10; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med10 (InterPro:IPR019145); BEST Arabidopsis thaliana protein match is: Mediator complex, subunit Med10 (TAIR:AT5G41910.1); Has 312 Blast hits to 312 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 119; Plants - 49; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||
| Protein Annotations |
|
||||||||
| Coordinates (TAIR10) | chr1:+:9214510..9215426 | ||||||||
| Molecular Weight (calculated) | 20913.70 Da | ||||||||
| IEP (calculated) | 4.90 | ||||||||
| GRAVY (calculated) | -0.52 | ||||||||
| Length | 189 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MDPTQNTSAG IGGSNGTIRY QTNDGTSTVT VADDSKENLS QVINSIEKTL GVLHQLHLTV TSFTPASQLH LLQRLNSLVM ELDNMTKLSE KCNIQIPMEV 101: LNLIDDGKNP DEFTKDVLNS CIARNQVTKG KTDAFKDLRK HILEELEQNF PDEVDMYREI RASSAAEAKR LAQSQSVLPN GDAKVKNEL |
||||||||
| See Also |
|
||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)