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AT5G42060.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.837
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DEK, chromatin associated protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEK, chromatin associated protein; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: DEK, chromatin associated protein (TAIR:AT1G64490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19461DNASU:834211EMBL:AB017067EMBL:AY072311
EMBL:AY114547EMBL:CP002688EnsemblPlants:AT5G42060EnsemblPlants:AT5G42060.1
entrez:834211Gene3D:1.10.10.60GeneID:834211Genevisible:Q9FHX8
GO:GO:0003677GO:GO:0016592Gramene:AT5G42060.1hmmpanther:PTHR13215
hmmpanther:PTHR13215:SF6HOGENOM:HOG000152477InParanoid:Q9FHX8IntAct:Q9FHX8
InterPro:IPR009057InterPro:IPR014876KEGG:ath:AT5G42060OMA:LSQDPYK
PaxDb:Q9FHX8Pfam:PF08766Pfam:Q9FHX8PhylomeDB:Q9FHX8
PRIDE:Q9FHX8PRO:PR:Q9FHX8ProteinModelPortal:Q9FHX8Proteomes:UP000006548
RefSeq:NP_199021.1SMR:Q9FHX8STRING:3702.AT5G42060.1TAIR:AT5G42060
UniGene:At.30192UniProt:Q9FHX8
Coordinates (TAIR10) chr5:-:16818644..16818922
Molecular Weight (calculated) 10702.10 Da
IEP (calculated) 5.34
GRAVY (calculated) -0.51
Length 92 amino acids
Sequence (TAIR10)
(BLAST)
1: MEEVAREEVE IDKDLRRKIK KTVKKILESS NLYKITEIKA REEASLKLDL DLSQDPYKVI VKEEVENFLE EAVKLIGNKL AMLPKRIEST SI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)