suba logo
AT1G64490.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DEK, chromatin associated protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEK, chromatin associated protein; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: DEK, chromatin associated protein (TAIR:AT5G42060.1); Has 63 Blast hits to 62 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSWUeggNOG:ENOG41108EKEMBL:AC009519EMBL:AK175745
EMBL:AY084856EMBL:BT024574EMBL:CP002684EnsemblPlants:AT1G64490
EnsemblPlants:AT1G64490.1entrez:842757Gene3D:1.10.10.60GeneID:842757
GO:GO:0003677Gramene:AT1G64490.1hmmpanther:PTHR13215hmmpanther:PTHR13215:SF6
HOGENOM:HOG000152477InterPro:IPR009057InterPro:IPR014876KEGG:ath:AT1G64490
OMA:EKAIMTIPfam:PF08766PhylomeDB:Q9SGW6Proteomes:UP000006548
RefSeq:NP_564835.1SMR:Q9SGW6STRING:3702.AT1G64490.1TAIR:AT1G64490
UniGene:At.35993UniProt:Q9SGW6
Coordinates (TAIR10) chr1:+:23952166..23952540
Molecular Weight (calculated) 14189.10 Da
IEP (calculated) 6.06
GRAVY (calculated) -0.85
Length 124 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEEEARQVV IDNDLKKKIK ETVKKILKRS SLLEITEIKA REEASSELNL DLSRDPYKII VREAVDSFIE KAIMTIDTEM GKLHTQIVED VDGEVTENAT
101: KTTTKKKKKK KAKKKVEEEE SSPA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)