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AT2G31410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22318864 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 1719 Blast hits to 1091 proteins in 184 species: Archae - 5; Bacteria - 24; Metazoa - 559; Fungi - 169; Plants - 192; Viruses - 1; Other Eukaryotes - 769 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX44eggNOG:ENOG4111X81EMBL:AC007169EMBL:AF360261
EMBL:AY051022EMBL:CP002685EnsemblPlants:AT2G31410EnsemblPlants:AT2G31410.1
entrez:817699GeneID:817699Gramene:AT2G31410.1hmmpanther:PTHR13557
HOGENOM:HOG000239217IntAct:Q9SIC8InterPro:IPR026570KEGG:ath:AT2G31410
ncoils:CoilOMA:GTTFEERPANTHER:PTHR13557PhylomeDB:Q9SIC8
PIR:D84720Proteomes:UP000006548RefSeq:NP_565723.1STRING:3702.AT2G31410.1
TAIR:AT2G31410UniGene:At.19710UniProt:Q9SIC8
Coordinates (TAIR10) chr2:-:13392220..13392819
Molecular Weight (calculated) 22699.40 Da
IEP (calculated) 10.85
GRAVY (calculated) -1.24
Length 199 amino acids
Sequence (TAIR10)
(BLAST)
001: MACTVDFRCL DEGFGGKTYK RKRESQEQAA AEAIADEASM DIDGAPPAAK RSAVASSENP DKPIALAVER PTYDGVIAGK VSGRNWKQPR THRSSGRFVK
101: NRKPDLEEMK RQREIKKAYK ERVNELKEEI RSNKVEKRKK KEEREKRKKE NVLRTGTKLQ KITNPKTLKK ISMSKKQRKQ LKKIPDEMLS GGSKKSITN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)