AT5G66540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:26556653..26559310 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59747.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.23 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.10 | ||||||||||||||||||||||||||||||||||||
| Length | 524 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATVKDSGFE ALEKLKATEP PVFLAPSSIS EDARSASQYL FMKLKPHNPK CPFDQLSSDG FDAEQIWQQI DMQSQPLLTS LRQEVKRFAK NPEEIRKLGK 101: LALKVSHEDD IDEMDMDGFD SDDVDDEDKE IESNDSEGED EEEEEEDEEE EEEEEEEEEE EKDGDNEGIE DKFFKIKELE EFLEEGEAEE YGIDHKNKKG 201: VAQRKKQNLS DDEDEEDDDD EEEDVEFDAF AGGDDEETDK LGKARYDDFF GGKKETKMKL KDLSEDEEAE IENKGNEKLS THERARLKLQ SKIEQMEKAN 301: LDPKHWTMQG EITAAKRPMN SALEVDLDFE HNARPAPVIT EEVTASLEDL IKSRIIEARF DDVQRAPRLP TKGKREAKEL DESKSKKGLA EVYEAEYFQK 401: ANPAFAPTTH SDELKKEASM LFKKLCLKLD ALSHFHFTPK PVIEEMSIPN VSAIAMEEVA PVAVSDAAML APEEIFSGKG DIKDESELTQ EDRKRRRANK 501: KRKFKAESAN EPPKKALDTS TKNP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)