AT1G69070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nop14-like protein (InterPro:IPR007276); Has 69842 Blast hits to 35213 proteins in 1572 species: Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:25967421..25971389 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 103647.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.20 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.87 | ||||||||||||||||||||||||||||||||
| Length | 901 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKDNKMKKK PNKKGERRMG PDAVAMKAKT QKVDNPFESI RSRRKFDILG KKRKGEERFV SVSRTRAVDK RKNTLEKEYE QSLKSSVFLD KRIGEQNDEL 101: GEFDKGIIRS QRQRQLKLAK KSMYNLSDGE EDVYEDGALG GSSVKDDFDS GLLSDEDLQD DDLEASASKR LKHLNRNREV DASGEEERRK SKKEVMEEII 201: MKSKLGRMEK AKQKEEKGKL MDELDKNFKS LVNSEAMESL TKPFVAEENT RDPYLLSLND MSMEIRARPS ERTKTPEEIA QKEREKLEAL EEERKKRMQE 301: TEELSDGDEE IGGEESTKRL TVISGDDLGD SFSVEEDKPK RGWIDDVLER EDNVDNSESD EDEDSESEEE EDDDGESDGG DEKQRKGHHL EDWEQSDDEL 401: GAELEDEEED DDEEDDDEED AELRVHKKLK NDYAAPYKGE GLSGTVKEKT NMKKMSSTQR DIPFMIDPPK NFEELLALVE DCSNEDVILI VNRIRIAHSI 501: KIKAENRKKM QVFYGVLLQY FAVLASKKPL NFDLLNMLVK PLIEMSMEIP YFAAICARQR LLKTRSQFCE AIKNPEDGCW PSLKTLFLLR LWSLIFPCSD 601: FRHAVMTPSI LLMCEYLMRC PISSGRDIAI GSFLCSIVLL QSKKFCPEAI LFIRTLLMAA SDKKSPASAE SEFYHFMELK SLTPLLCIQD NVKEVMPLNF 701: LKIMNEPADS PYFSSDDFRA SILSSVVETL EGFVEINGGL SSFPEIFMPI STLLHQIGNQ EKIPQTLKEK LEDVAKLIEK KTDDHHKERK PLSMRKHKPV 801: AIRMVNPKFE ENFVPGMDND PDKYRSDLKK LKRKLKREAR GAVRELRKDS YFMSTVKAKE KAAHEQERAE KHGKAWAFLQ EQEHAFKSGQ LGKGKGKKRR 901: R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)