AT1G06720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42440.1); Has 8329 Blast hits to 5822 proteins in 470 species: Archae - 49; Bacteria - 737; Metazoa - 2493; Fungi - 1253; Plants - 549; Viruses - 77; Other Eukaryotes - 3171 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:2060615..2067281 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 131192.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.98 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.86 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1147 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAADELMPSH RSHRTPKSGP TARKKSELDK KKRGISVDKQ KNLKAFGVKS VVHAKKAKHH AAEKEQKRLH LPKIDRNYGE APPFVVVVQG PPGVGKSLVI 0101: KSLVKEFTKQ NVPEVRGPIT IVQGKQRRFQ FVECPNDINA MVDCAKVADL ALLVVDGSYG FEMETFEFLN IMQVHGFPRV MGVLTHLDKF NDVKKLRKTK 0201: HHLKHRFWTE IYHGAKLFYL SGLIHGKYTP REVHNLARFV IVIKPQPLTW RTAHPYVLVD RLEDVTPPEK VQMDKKCDRN ITVFGYLRGC NFKKRMKVHI 0301: AGVGDFIVAG VTALTDPCPL PSAGKKKGLR DRDKLFYAPM SGIGDLVYDK DAVYININSH QVQYSKTDDG KGEPTNKGKG RDVGEDLVKS LQNTKYSVDE 0401: KLDKTFINFF GKKTSASSET KLKAEDAYHS LPEGSDSESQ SGDDEEDIVG NESEMKQETE IHGGRLRRKA IFKTDLNEDD FEEADDLELD SYDPDTYDFE 0501: EADDAESDDN EVEDGGDDSA SDSADGEPGD YQIDDKDSGN ISQWKAPLKE IARKKNPNLM QIVYGASSLA TPLINENHDI SDDDESDDED FFKPKGEQHK 0601: NLGGGLDVGY VNSEDCSKFV NYGYLKNWKE KEVCESIRDR FTTGDWSKAA LRDKNLGTGG EGEDDELYGD FEDLETGEKH KSHENLESGA NENEDEDAEV 0701: VERDGNNPRS QADEPGYADK LKEAQEITKQ RNELEYNDLD EETRIELAGF RTGTYLRLEI HNVPYEMVEF FDPCHPILVG GIGFGEDNVG YMQARLKKHR 0801: WHKKVLKTRD PIIVSIGWRR YQTIPVFAIE DRNGRHRMLK YTPEHMHCLA SFWGPLVPPN TGFVAFQNLS NNQAGFRITA TSVVLEFNHQ ARIVKKIKLV 0901: GTPCKIKKKT AFIKDMFTSD LEIARFEGSS VRTVSGIRGQ VKKAGKNMLD NKAEEGIARC TFEDQIHMSD MVFLRAWTTV EVPQFYNPLT TALQPRDKTW 1001: NGMKTFGELR RELNIPIPVN KDSLYKAIER KQKKFNPLQI PKRLEKDLPF MSKPKNIPKR KRPSLEDKRA VIMEPKERKE HTIIQQFQLL QHHTMKKKKA 1101: TDQKKRKEYE AEKAKNEEIN KKRRREERRD RYREEDKQKK KTRRSLD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)