AT2G21440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 28 (TAIR:AT5G18810.1); Has 993074 Blast hits to 495169 proteins in 22089 species: Archae - 21796; Bacteria - 609929; Metazoa - 180707; Fungi - 26716; Plants - 57391; Viruses - 71662; Other Eukaryotes - 24873 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:9173712..9179065 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 112072.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.10 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1003 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGKNKRERKD GEEKSPHAAA TVCVSGLPYS ITNAQLEEAF SEVGPVRRCF LVTNKGSDEH RGFAFVKFAL QEDVNRAIEL KNGSTVGGRR ITVKQAAHRP 0101: SLQERRTKAA EGISVPDNSQ GQSDKDTSIP ETDEKVSPPE KKLEKPVERK KVEKPIERKQ VEKPVERKKA EKPIELKQVE KPFERKQVEK PVERKQVEKP 0201: VERKQVEKPI ERKRPTKLHV DLPDKETCSD KQRVARTVIF GGLANAEMAE VVHSRVKEIG TVCSVRYPLP KEELQQNGLT QDGCRAEASA VLFTSVKSAC 0301: AAVAKLHQTE VKGNLIWARQ LGGEGSKAQK WKLIIRNLPF QAKPSDIKVV FSAVGFVWDV FIPKNFETGL PKGFAFVKFT CKKDAANAIK KFNGHMFGKR 0401: PIAVDWAVPK NIYNGAADAT TASADGDKEG SDGDSENSSV DLEEVDEAVE SHPPPGDDTD DDEDGSNKLT ESDALDKDVG TDMNFEDEAD VARKVLKNLL 0501: ASSKGSTATP EGETEESDKS KLKSSSTKPV ADSSGVSEPL KSGKTKVVAP KETQDNDDFE RTLFIRNLPF DVTKEEVKQR FTVFGEVESL SLVLHKVTKR 0601: PEGTAFVKFK TADASVAAIS AADTASGVGV LLKGRQLNVM RAVGKKAAKD IELKKTEEKN VDHRNLYLAK EGQILDDTPA AEGVSAEDMD KRRRLHENKM 0701: KMLQSPNFHV SRTRLVIYNL PKSMNPKQLN RLLVDAVTSR ATKQKPCIRQ IKFLQNEKKG KVDTKNYSRG VAFVEFTEHE HALVALRVLN NNPETFGPQH 0801: RPVIEFAVDN VQKLKIREAK QQQFQQREKH NESDQQQANG EAQAPDNKYK RKTREGDNTG PRKENAARFK KGPREESKEE AKSNIAVKDN AAEKKRPIRT 0901: QEKPSSNKKG QLMRQKETTE KPDPKISKDL SEPRKRKFGE DRGEENRNGQ RKRKKQGQGQ GGAEVVDKLD LLIEKYRSKF SQSSAKTGPQ KQSSGQVRRW 1001: FES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)