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AT4G16630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:22550958 (2012): plastid
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DEA(D/H)-box RNA helicase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 91788 Blast hits to 67613 proteins in 3461 species: Archae - 858; Bacteria - 34733; Metazoa - 21444; Fungi - 9002; Plants - 4280; Viruses - 615; Other Eukaryotes - 20856 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2650-MONOMERBioGrid:12657EC:3.6.4.13eggNOG:COG0513
eggNOG:KOG0338EMBL:AJ010475EMBL:AK228353EMBL:AL161544
EMBL:CP002687EMBL:Z97341EnsemblPlants:AT4G16630EnsemblPlants:AT4G16630.1
entrez:827364Gene3D:3.40.50.300GeneID:827364Genevisible:Q9ZRZ8
GO:GO:0003723GO:GO:0004386GO:GO:0005524Gramene:AT4G16630.1
hmmpanther:PTHR24031hmmpanther:PTHR24031:SF277HOGENOM:HOG000265456InParanoid:Q9ZRZ8
IntAct:Q9ZRZ8InterPro:IPR000629InterPro:IPR001650InterPro:IPR011545
InterPro:IPR014001InterPro:IPR014014InterPro:IPR027417iPTMnet:Q9ZRZ8
KEGG:ath:AT4G16630KO:K13181ncoils:CoilOMA:MEDQYSA
PaxDb:Q9ZRZ8Pfam:PF00270Pfam:PF00271Pfam:Q9ZRZ8
Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195PhylomeDB:Q9ZRZ8
PIR:D71433PIR:T51310PRIDE:Q9ZRZ8PRO:PR:Q9ZRZ8
PROSITE:PS00039PROSITE:PS51192PROSITE:PS51194PROSITE:PS51195
ProteinModelPortal:Q9ZRZ8Proteomes:UP000006548RefSeq:NP_193396.3scanprosite:PS00039
SMART:SM00487SMART:SM00490SMR:Q9ZRZ8STRING:3702.AT4G16630.1
SUPFAM:SSF52540TAIR:AT4G16630UniGene:At.49UniProt:Q9ZRZ8
Coordinates (TAIR10) chr4:-:9362176..9366449
Molecular Weight (calculated) 89359.60 Da
IEP (calculated) 5.33
GRAVY (calculated) -0.81
Length 789 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)