suba logo
AT5G19990.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : regulatory particle triple-A ATPase 6A
Curator
Summary (TAIR10)
26S proteasome AAA-ATPase subunit
Computational
Description (TAIR10)
regulatory particle triple-A ATPase 6A (RPT6A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G20000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:17397eggNOG:COG1222eggNOG:KOG0728EMBL:AB044348
EMBL:AF123395EMBL:AF296836EMBL:AY065174EMBL:BT009668
EMBL:CP002688EnsemblPlants:AT5G19990EnsemblPlants:AT5G19990.1entrez:832121
Gene3D:3.40.50.300GeneID:832121Genevisible:Q9C5U3GO:GO:0000502
GO:GO:0005524GO:GO:0005634GO:GO:0005829GO:GO:0005886
GO:GO:0017025GO:GO:0030433GO:GO:0031595GO:GO:0031597
GO:GO:0036402GO:GO:0045899GO:GO:1901800Gramene:AT5G19990.1
hmmpanther:PTHR23073hmmpanther:PTHR23073:SF12HOGENOM:HOG000225143InParanoid:Q9C5U3
IntAct:Q9C5U3InterPro:IPR003593InterPro:IPR003959InterPro:IPR003960
InterPro:IPR005937InterPro:IPR027417iPTMnet:Q9C5U3KEGG:ath:AT5G19990
KO:K03066ncoils:CoilOMA:HSYFTQKPaxDb:Q9C5U3
Pfam:PF00004Pfam:Q9C5U3PhylomeDB:Q9C5U3PRIDE:Q9C5U3
PRO:PR:Q9C5U3PROSITE:PS00674ProteinModelPortal:Q9C5U3Proteomes:UP000006548
Reactome:R-ATH-1236978Reactome:R-ATH-174184Reactome:R-ATH-349425Reactome:R-ATH-5632684
Reactome:R-ATH-68949Reactome:R-ATH-69017Reactome:R-ATH-983168RefSeq:NP_568389.1
scanprosite:PS00674SMART:SM00382SMR:Q9C5U3STRING:3702.AT5G19990.1
SUPFAM:SSF52540TAIR:AT5G19990tair10-symbols:ATSUG1tair10-symbols:RPT6A
TIGRfam:TIGR01242TIGRFAMs:TIGR01242UniGene:At.10507UniProt:Q9C5U3
Coordinates (TAIR10) chr5:+:6752144..6754918
Molecular Weight (calculated) 47250.80 Da
IEP (calculated) 9.37
GRAVY (calculated) -0.39
Length 419 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAVGVDSRR PETAMEETCN VKGAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)