AT3G16320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Subunit in the anaphase-promoting complex. Role in gametogenesis, control of mitotic progression and cell differentiation during the entire life cycle. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CDC27a; FUNCTIONS IN: binding; INVOLVED IN: regulation of cell division, cell cycle, gamete generation, regulation of unidimensional cell growth; LOCATED IN: anaphase-promoting complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: CDC27 family protein (TAIR:AT2G20000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:5529534..5534465 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81118.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.36 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 717 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMENLLANCV QKNLNHFMFT NAIFLCELLL AQFPSEVNLQ LLARCYLSNS QAYSAYYILK GSKTPQSRYL FAFSCFKLDL LGEAEAALLP CEDYAEEVPG 101: GAAGHYLLGL IYRYSGRKNC SIQQFRMALS FDPLCWEAYG ELCSLGAAEE ASTVFGNVAS QRLQKTCVEQ RISFSEGATI DQITDSDKAL KDTGLSQTEH 201: IPGENQQDLK IMQQPGDIPP NTDRQLSTNG WDLNTPSPVL LQVMDALPPL LLKNMRRPAV EGSLMSVHGV RVRRRNFFSE ELSAEAQEES GRRRSARIAA 301: RKKNPMSQSF GKDSHWLHLS PSESNYAPSL SSMIGKCRIQ SSKEATTSGQ SVSDIGSSVD DEEKSNPSES SPDRFSLISG ISEVLSLLKI LGDGHRHLHM 401: YKCQEALLAY QKLSQKQYNT HWVLMQVGKA YFELQDYFNA DSSFTLAHQK YPYALEGMDT YSTVLYHLKE EMRLGYLAQE LISVDRLSPE SWCAVGNCYS 501: LRKDHDTALK MFQRAIQLNE RFTYAHTLCG HEFAALEEFE DAERCYRKAL GIDTRHYNAW YGLGMTYLRQ EKFEFAQHQF QLALQINPRS SVIMCYYGIA 601: LHESKRNDEA LMMMEKAVLT DAKNPLPKYY KAHILTSLGD YHKAQKVLEE LKECAPQESS VHASLGKIYN QLKQYDKAVL HFGIALDLSP SPSDAVKIKA 701: YMERLILPDE LVTEENL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)