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AT3G19210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homolog of RAD54
Curator
Summary (TAIR10)
Encodes RAD54, a member of the SWI2/SNF2 family of DNA-stimulated ATPases. Functions in DNA repair via homologous recombination.
Computational
Description (TAIR10)
homolog of RAD54 (RAD54); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: DNA repair, response to gamma radiation, double-strand break repair via homologous recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: style (sensu Poaceae), hydathode, root, petiole, cultured cell; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G08600.2); Has 18387 Blast hits to 15591 proteins in 2067 species: Archae - 120; Bacteria - 5826; Metazoa - 3647; Fungi - 4163; Plants - 1557; Viruses - 140; Other Eukaryotes - 2934 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-343-MONOMERBioGrid:6788EC:3.6.4.-eggNOG:COG0553
eggNOG:KOG0390EMBL:AB250666EMBL:AP000419EMBL:CP002686
EMBL:DQ912973EnsemblPlants:AT3G19210EnsemblPlants:AT3G19210.1EnsemblPlants:AT3G19210.2
entrez:821455ExpressionAtlas:Q0PCS3Gene3D:3.40.50.300GeneID:821455
Genevisible:Q0PCS3GO:GO:0000724GO:GO:0003677GO:GO:0004386
GO:GO:0005524GO:GO:0005634GO:GO:0007067GO:GO:0010332
GO:GO:0016032GO:GO:0045003GO:GO:0051301GO:GO:0051701
GO:GO:0071248GO:GO:0071480hmmpanther:PTHR10799HOGENOM:HOG000204521
InParanoid:Q0PCS3IntAct:Q0PCS3InterPro:IPR000330InterPro:IPR001650
InterPro:IPR014001InterPro:IPR027417iPTMnet:Q0PCS3KEGG:ath:AT3G19210
KO:K10875OMA:EAPIICGPaxDb:Q0PCS3Pfam:PF00176
Pfam:PF00271Pfam:Q0PCS3Pfscan:PS51192Pfscan:PS51194
PhylomeDB:Q0PCS3PRIDE:Q0PCS3PRO:PR:Q0PCS3PROSITE:PS51192
PROSITE:PS51194ProteinModelPortal:Q0PCS3Proteomes:UP000006548RefSeq:NP_001189933.1
RefSeq:NP_188552.3SMART:SM00487SMART:SM00490SMR:Q0PCS3
STRING:3702.AT3G19210.1SUPFAM:SSF52540TAIR:AT3G19210tair10-symbols:ATRAD54
tair10-symbols:CHR25tair10-symbols:RAD54UniGene:At.53386UniProt:Q0PCS3
Coordinates (TAIR10) chr3:-:6652799..6658876
Molecular Weight (calculated) 101863.00 Da
IEP (calculated) 5.95
GRAVY (calculated) -0.48
Length 910 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEEDEEILS SSDCDDSSDS YKDDSQDSEG ENDNPECEDL AVVSLSSDAD RKSKNVKDLL RGNLVVQRQP LLPRVLSVSD GAAVCRKPFK PPCSHGYDST
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL EEDLGSWGHH FTSKSVPDAI
801: LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL
901: VSVNHDDDFV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)