AT3G52115.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : gamma response gene 1 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Induced in response to ionizing radiation, shows basal expression in mitotically active cells and high expression in endoreduplicating cells. May be involved in DNA damage-induced growth arrest. Protein sequence contains a PEST destruction box. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
gamma response gene 1 (GR1); INVOLVED IN: meiotic DNA double-strand break processing, response to DNA damage stimulus, gamete generation, response to ionizing radiation; EXPRESSED IN: bud, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: DNA repair protein Sae2/CtIP (InterPro:IPR013882); Has 26568 Blast hits to 17186 proteins in 1344 species: Archae - 485; Bacteria - 2739; Metazoa - 14510; Fungi - 2010; Plants - 1072; Viruses - 86; Other Eukaryotes - 5666 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19326333..19328245 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67234.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.41 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.89 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 588 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGDETVDGIE AKYISGLSTI MVATIQEAKD RISQIEYIFC SQLFPNFQSK SKAFEKVYSE ARLAACDTWK DREKSLLDQI EELKVENQQI KSDKEKLAEE 101: LGKTASMPLR LTSLQGYIDH LKKKMKSRSK MVGDARDLYY RLVELLQVKG LDELSEDGIN MIVSEVKSLK MKTEFLQEEL SKKTLVTENL LKKLEYLSTE 201: AADGERKLSS VEEEKQRLKT RLQVFEENVG RLEEILRQKT DEVEEGKTAL EVLQGKLKLT EREMLNCKQK IADHEKEKTV VMGKAKDDMQ GRHGSYLADL 301: EALRCQSEEK SFELAMEIKK NKELSRTCKK WKSQHTFLCK RFNFTPDSVL HQSSLEDENK EIGQHEKSAI SSYLERKHSE TAEGADKVRI GTGSSGNNYE 401: KESIIKTVQT PITSISPIVR SPGAAKPPQL SGLKRPASIW RDTRSRQSPG GHDPHDDFLD TPIENVKRVA GEEKHVHDVA KKDDSDDETQ DMNPKPSPSR 501: QRIQIAETSK KSFKHVESVR KKAERENLKG IECKQCKKFY DAVHPENEGN GNKSLRCEHH EGVSRHRYRY APPMTPEGFW NIGFESEM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)