AT4G02110.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transcription coactivators | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transcription coactivators; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (TAIR:AT1G67180.1); Has 6090 Blast hits to 4661 proteins in 497 species: Archae - 12; Bacteria - 945; Metazoa - 2581; Fungi - 684; Plants - 424; Viruses - 13; Other Eukaryotes - 1431 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:935191..940191 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 145935.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.43 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1329 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MQSDSGLPPK TYSGVKFALV GFNPIHGNSL RSKLVSGGGV DVGQFTQSCT HLIVDKLLYD DPICVAARNS GKVVVTGSWV DHSFDIGMLD NANSILYRPL 0101: RDLNGIPGSK ALVVCLTGYQ GHDREDIMRM VELMGGQFSK PLVANRVTHL ICYKFEGEKY ELAKRIKRIK LVNHRWLEDC LKNWKLLPEV DYEISGYELD 0201: IMEASARDSE DEAEDASVKP ANTSPLGLRV GAVPAVEISK PGGKDFPLEE GSSLCNTSKD NWLTPKRTDR PFEAMVSTDL GVAQQHNYVS PIRVANKTPE 0301: QGMSKMETDG STSINRSIRR HSSLATYSRK TLQRSPETDT LGKESSGQNR SLRMDDKGLK ASSAFNTSAS KSGSSMERTS LFRDLGKIDM LHGEEFPPMM 0401: PQAKFTDGSV SRKDSLRVHH NSEASIPPPS SLLLQELRPS SPNDNLRPVM SISDPTESEE AGHKSPTSEL NTKLLSSNVV PMVDALSTAE NIISNCAWDE 0501: IPEKSLTERM TENVLLQEQR SGSPKQNLSV VPNLREAAHE LDLSDSAARL FNSGVVPMEA DIRTPENSTM KGALDEVPER SVTDPVMRRS STSPGSGLIR 0601: MKDKQETELT TKKTAPKKSL GTRGRKKNPI NQKGSIYLSE PSPTDERNVC LNKGKVSAPV TGNSNQKEIS SPVLNTEVVQ DMAKHIDTET EALQGIDSVD 0701: NKSLAPEEKD HLVLDLMVNQ DKLQAKTPEA ADAEVEITVL ERELNDVPTE DPSDGALQSE VDKNTSKRKR EAGVGKNSLQ RGKKGSSFTA KVGKSRVKKT 0801: KISRKENDIK ANGTLMKDGG DNSADGKENL ALEHENGKVS SGGDQSLVAG ETLTRKEAAT KDPSYAAAQL EVDTKKGKRR KQATVEENRL QTPSVKKAKV 0901: SKKEDGAKAN NTVKKDIWIH SAEVKENVAV DENCGDVSSD GAQSLVVEKS LAKKEAAAKD PSNAAMQLEF DDNKCKHGKE GIVERSSLQS GKKGSSSRVE 1001: VGKSSVKKTK KSEKGSGTEA TDTVMKDVGD NSAKEKENIA VDNESRKVGS GGDQSPVARK KVAKSAKTGT KAEKESKQLR VNPLASRKVF QDQEHEPKFF 1101: IVSGPRSQRN EYQQIIRRLK GKCCRDSHQW SYQATHFIAP EIRRTEKFFA AAASGSWILK TDYVADSKEA GKLLQEEPYE WHSSGLSADG AINLESPKKW 1201: RLVREKTGHG ALYGLRIVVY GDCTIPCLDT LKRAVKAGDG TILATAPPYT RFLNQNTDFA LISPGMPRDD VWIQEFIRHE IPCVLSDYLV EYVCKPGYAL 1301: DKHVLYNTNS WAEKSFNKMQ LRADLCVYH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)