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AT5G49160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : methyltransferase 1
Curator
Summary (TAIR10)
Encodes a cytosine methyltransferase MET1. Required for silencing of FWA paternal allele in endosperm. Two lines with RNAi constructs directed against DMT1 have reduced agrobacterium-mediated tumor formation.
Computational
Description (TAIR10)
methyltransferase 1 (MET1); FUNCTIONS IN: methyltransferase activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA (cytosine-5)-methyltransferase 1 (InterPro:IPR017198), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), DNA methylase, C-5 cytosine-specific, active site (InterPro:IPR018117); BEST Arabidopsis thaliana protein match is: DNA (cytosine-5-)-methyltransferase family protein (TAIR:AT4G08990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G49160-MONOMERBioGrid:20221EC:2.1.1.37eggNOG:COG0270
eggNOG:ENOG410IF68EMBL:AB016872EMBL:AK229013EMBL:AK230148
EMBL:AY699012EMBL:CP002688EMBL:L10692EnsemblPlants:AT5G49160
EnsemblPlants:AT5G49160.1entrez:834975Gene3D:3.40.50.150GeneID:834975
Genevisible:P34881GO:GO:0003677GO:GO:0003682GO:GO:0003886
GO:GO:0005634GO:GO:0006349GO:GO:0008168GO:GO:0009294
GO:GO:0009910GO:GO:0010069GO:GO:0010216GO:GO:0010424
GO:GO:0016568Gramene:AT5G49160.1hmmpanther:PTHR10629hmmpanther:PTHR10629:SF11
HOGENOM:HOG000083447InParanoid:P34881InterPro:IPR001025InterPro:IPR001525
InterPro:IPR018117InterPro:IPR022702InterPro:IPR029063InterPro:IPR031303
iPTMnet:P34881KEGG:ath:AT5G49160KO:K00558ncoils:Coil
OMA:DSYQFAGPaxDb:P34881Pfam:P34881Pfam:PF00145
Pfam:PF01426Pfam:PF12047Pfscan:PS51038Pfscan:PS51679
PhylomeDB:P34881PIR:S59604PRIDE:P34881PRINTS:PR00105
PRO:PR:P34881PROSITE:PS00094PROSITE:PS00095PROSITE:PS51038
PROSITE:PS51679ProteinModelPortal:P34881Proteomes:UP000006548REBASE:11752
RefSeq:NP_199727.1scanprosite:PS00094scanprosite:PS00095SMART:SM00439
SMR:P34881STRING:3702.AT5G49160.1SUPFAM:SSF53335TAIR:AT5G49160
tair10-symbols:DDM2tair10-symbols:DMT01tair10-symbols:DMT1tair10-symbols:MET1
tair10-symbols:MET2tair10-symbols:METITIGRfam:TIGR00675TIGRFAMs:TIGR00675
UniGene:At.20294UniProt:P34881
Coordinates (TAIR10) chr5:+:19932501..19938186
Molecular Weight (calculated) 172440.00 Da
IEP (calculated) 6.25
GRAVY (calculated) -0.47
Length 1534 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVENGAKAAK RKKRPLPEIQ EVEDVPRTRR PRRAAACTSF KEKSIRVCEK SATIEVKKQQ IVEEEFLALR LTALETDVED RPTRRLNDFV LFDSDGVPQP
0101: LEMLEIHDIF VSGAILPSDV CTDKEKEKGV RCTSFGRVEH WSISGYEDGS PVIWISTELA DYDCRKPAAS YRKVYDYFYE KARASVAVYK KLSKSSGGDP
0201: DIGLEELLAA VVRSMSSGSK YFSSGAAIID FVISQGDFIY NQLAGLDETA KKHESSYVEI PVLVALREKS SKIDKPLQRE RNPSNGVRIK EVSQVAESEA
0301: LTSDQLVDGT DDDRRYAILL QDEENRKSMQ QPRKNSSSGS ASNMFYIKIN EDEIANDYPL PSYYKTSEEE TDELILYDAS YEVQSEHLPH RMLHNWALYN
0401: SDLRFISLEL LPMKQCDDID VNIFGSGVVT DDNGSWISLN DPDSGSQSHD PDGMCIFLSQ IKEWMIEFGS DDIISISIRT DVAWYRLGKP SKLYAPWWKP
0501: VLKTARVGIS ILTFLRVESR VARLSFADVT KRLSGLQAND KAYISSDPLA VERYLVVHGQ IILQLFAVYP DDNVKRCPFV VGLASKLEDR HHTKWIIKKK
0601: KISLKELNLN PRAGMAPVAS KRKAMQATTT RLVNRIWGEF YSNYSPEDPL QATAAENGED EVEEEGGNGE EEVEEEGENG LTEDTVPEPV EVQKPHTPKK
0701: IRGSSGKREI KWDGESLGKT SAGEPLYQQA LVGGEMVAVG GAVTLEVDDP DEMPAIYFVE YMFESTDHCK MLHGRFLQRG SMTVLGNAAN ERELFLTNEC
0801: MTTQLKDIKG VASFEIRSRP WGHQYRKKNI TADKLDWARA LERKVKDLPT EYYCKSLYSP ERGGFFSLPL SDIGRSSGFC TSCKIREDEE KRSTIKLNVS
0901: KTGFFINGIE YSVEDFVYVN PDSIGGLKEG SKTSFKSGRN IGLRAYVVCQ LLEIVPKESR KADLGSFDVK VRRFYRPEDV SAEKAYASDI QELYFSQDTV
1001: VLPPGALEGK CEVRKKSDMP LSREYPISDH IFFCDLFFDT SKGSLKQLPA NMKPKFSTIK DDTLLRKKKG KGVESEIESE IVKPVEPPKE IRLATLDIFA
1101: GCGGLSHGLK KAGVSDAKWA IEYEEPAGQA FKQNHPESTV FVDNCNVILR AIMEKGGDQD DCVSTTEANE LAAKLTEEQK STLPLPGQVD FINGGPPCQG
1201: FSGMNRFNQS SWSKVQCEMI LAFLSFADYF RPRYFLLENV RTFVSFNKGQ TFQLTLASLL EMGYQVRFGI LEAGAYGVSQ SRKRAFIWAA APEEVLPEWP
1301: EPMHVFGVPK LKISLSQGLH YAAVRSTALG APFRPITVRD TIGDLPSVEN GDSRTNKEYK EVAVSWFQKE IRGNTIALTD HICKAMNELN LIRCKLIPTR
1401: PGADWHDLPK RKVTLSDGRV EEMIPFCLPN TAERHNGWKG LYGRLDWQGN FPTSVTDPQP MGKVGMCFHP EQHRILTVRE CARSQGFPDS YEFAGNINHK
1501: HRQIGNAVPP PLAFALGRKL KEALHLKKSP QHQP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)