AT3G59550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Rad21/Rec8-like family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an alpha-kleisin protein that is localized primarily in the nucleolus and is essential for megagametogenesis and plays an important role in pollen development. alpha-kleisins are core components of meiotic and mitotic cohesin complexes. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SYN3; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitosis, megagametogenesis, pollen development; LOCATED IN: nucleolus, nucleus, nuclear cohesin complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rad21/Rec8 like protein, C-terminal (InterPro:IPR006909), Rad21/Rec8 like protein, N-terminal (InterPro:IPR006910); BEST Arabidopsis thaliana protein match is: Zinc knuckle (CCHC-type) family protein (TAIR:AT4G05360.1); Has 1082 Blast hits to 944 proteins in 221 species: Archae - 0; Bacteria - 42; Metazoa - 397; Fungi - 305; Plants - 228; Viruses - 4; Other Eukaryotes - 106 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:21997262..22000496 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77145.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.52 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 693 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFYSHTLLAR KGPLGTVWCA AHVHQRLKKS QYTSINIPDT VDNIMFPEVP LALRTSSHLL VGVVRIYSKK VDYLYNDWNL LNTWVAKAFV STQVNLPEDA 101: RQAPPESVTL PQALNLDEFD LEDDTLDMEF DNHTRSEEDI TLTDQIPTGI DPYVAVTFDE DIISESIPMD VDQSTEPVSR HTGEIDVETA HETGPDNEPR 201: DSNIAFDTGT YSPRNVTEEF TEVQDPRQSN LTEERIPNSE RNDATSPGTV PEIERMRDAA HDLSPTSHPS FAAQQQDVRV ERTESLDETL NEKEPTIPSI 301: DEEMLNSGRH SAFELRSGSP GSAAGSEEER ADFVHPSPQL VLQPSPPPQP QRRARKRKNF DGVTVLTNKN ISERLKDPSD TLRKRKKMPS SKLKFWRMNN 401: QSRKDQNFNE PLFTGFSDDL RNVFEKDYVA SKPHLAVSDE TLPEPASVSP TREAEVEINP VSPIPDSTNP DSTVQLSPAQ QTEDVLDSAG PRPAHAESVA 501: TEAQSPRTFD NDDMGIEHLR DGGFPVYMPS PPPRSSPFRT DDFTTQSGNW ETESYRTEPS TSTVPEDLPG QRNLGLSPVS ERTDEELYFL EVGGNSPVGT 601: PASQDSAALT GRARALAQYL KQRSSSSPTT SSHPSGDLSL SEILAGKTRK LAARMFFETL VLKSRGLIDM QQDRPYGDIA LKLMPALFSK VQT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)