AT1G67630.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : DNA polymerase alpha 2 | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
DNA polymerase alpha 2 (POLA2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase alpha, subunit B N-terminal (InterPro:IPR013627), DNA polymerase alpha, subunit B (InterPro:IPR016722), DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 415 Blast hits to 412 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 140; Plants - 46; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:25344573..25348287 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 69045.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.72 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 620 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MATDEEIKNE FKRSGFILVE EDEILKRCVT LCINYSLKPS DLVSSWELYH LNRQLLDQTV KKDDMDGFVL HLQNEQKESI MRVEEAGLHL YSNRDVDMLL 101: DGVQEDTEEI VTTPTNKSQR LHPDPFDSIS RSRDYGYSTG KSVGHVTPFG SRIEKFVVKF NVGNVAAHAE NGNNNDVENS EDDIIKRVQT SQRCSLKVNG 201: SGPEPGCRFM YDRTEDRFSA LEYRIVRHAD AFAASGLYEE QVDPAVASQR SIFAVGMICC DGEGHLNDKS ILLQSSAERT SGQRVPVDLK RLDQFSIFPG 301: QVVGIEGQNP SGHYLTASKL LDSVPLTLTV DVDLPPAKRQ ILDQEVLVPA EESCQKSEVS FIIASGPFTT SDNLLFEPLN ELLAYAKRKP PQLLVLLGPF 401: VDSEHPEIKK GAVDATFNEI FQVEVLRKLQ DYVEFMGSEV RVVLVPSIRD ANHDFIFPQP PFDIHIPDLE HQMTSLSNPG TFEANQVKVS CCTVDVLKQL 501: SGEEMSKNPS GVPTDRMSRL ASHLLRQRSF YPLYPPPESL PYDSSLAPKA LQISSIPDIL LLPSDMRYFV KILSLGEEED AAKCVCVNPG RLAKGEGAGT 601: FVELTYKGGP ESMHASIISI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)