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AT1G67630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA polymerase alpha 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA polymerase alpha 2 (POLA2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase alpha, subunit B N-terminal (InterPro:IPR013627), DNA polymerase alpha, subunit B (InterPro:IPR016722), DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 415 Blast hits to 412 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 140; Plants - 46; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5214eggNOG:KOG1625EMBL:CP002684EnsemblPlants:AT1G67630
EnsemblPlants:AT1G67630.1entrez:843086GeneID:843086GO:GO:0003677
GO:GO:0003887GO:GO:0005658GO:GO:0005739GO:GO:0006270
GO:GO:0046982Gramene:AT1G67630.1hmmpanther:PTHR23061hmmpanther:PTHR23061:SF12
InParanoid:F4HTP2InterPro:IPR007185InterPro:IPR016722iPTMnet:F4HTP2
KEGG:ath:AT1G67630KO:K02321OMA:FMYDRIEPaxDb:F4HTP2
Pfam:PF04042Pfam:PF08418PIRSF:PIRSF018300PRIDE:F4HTP2
ProteinModelPortal:F4HTP2Proteomes:UP000006548Reactome:R-ATH-113501Reactome:R-ATH-174411
Reactome:R-ATH-174430Reactome:R-ATH-68952Reactome:R-ATH-68962Reactome:R-ATH-69091
Reactome:R-ATH-69109Reactome:R-ATH-69166Reactome:R-ATH-69183RefSeq:NP_176930.2
SMR:F4HTP2STRING:3702.AT1G67630.1TAIR:AT1G67630tair10-symbols:POLA2
UniGene:At.35625UniProt:F4HTP2
Coordinates (TAIR10) chr1:-:25344573..25348287
Molecular Weight (calculated) 69045.90 Da
IEP (calculated) 4.72
GRAVY (calculated) -0.31
Length 620 amino acids
Sequence (TAIR10)
(BLAST)
001: MATDEEIKNE FKRSGFILVE EDEILKRCVT LCINYSLKPS DLVSSWELYH LNRQLLDQTV KKDDMDGFVL HLQNEQKESI MRVEEAGLHL YSNRDVDMLL
101: DGVQEDTEEI VTTPTNKSQR LHPDPFDSIS RSRDYGYSTG KSVGHVTPFG SRIEKFVVKF NVGNVAAHAE NGNNNDVENS EDDIIKRVQT SQRCSLKVNG
201: SGPEPGCRFM YDRTEDRFSA LEYRIVRHAD AFAASGLYEE QVDPAVASQR SIFAVGMICC DGEGHLNDKS ILLQSSAERT SGQRVPVDLK RLDQFSIFPG
301: QVVGIEGQNP SGHYLTASKL LDSVPLTLTV DVDLPPAKRQ ILDQEVLVPA EESCQKSEVS FIIASGPFTT SDNLLFEPLN ELLAYAKRKP PQLLVLLGPF
401: VDSEHPEIKK GAVDATFNEI FQVEVLRKLQ DYVEFMGSEV RVVLVPSIRD ANHDFIFPQP PFDIHIPDLE HQMTSLSNPG TFEANQVKVS CCTVDVLKQL
501: SGEEMSKNPS GVPTDRMSRL ASHLLRQRSF YPLYPPPESL PYDSSLAPKA LQISSIPDIL LLPSDMRYFV KILSLGEEED AAKCVCVNPG RLAKGEGAGT
601: FVELTYKGGP ESMHASIISI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)