AT2G40550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : E2F target gene 1 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a nuclear localized target of E2Fa-DPa, transcription factors controlling cell cycle progression. Required for sister chromatid cohesion and DNA repair. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
E2F target gene 1 (ETG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: sister chromatid cohesion, postreplication repair, DNA replication; LOCATED IN: nuclear replisome, nucleus, chloroplast envelope, MCM complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2044, membrane (InterPro:IPR019140); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:16934927..16938033 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65758.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.98 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 589 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGGPAYDCLT NPLGAVRFSF VNALSSGYDP ASSVGKDWGV VDLFRHYFSD ESAISQVPIL DSSSIKWVQP KTLVRFRGMI QDMLGNEFYA GAYKDDSTWR 101: TNKYSDVSQF PEGSSTEIQV WERRLLYCVP VPGKNQWTEC SSQELKNRFL DLTGQNREKR VRVDEEMTDS MDSSTLEAGR NGSPFKKMKV GEATSSASES 201: QVPQTSGIPP ATSADSLPCL VKIYDSPESD LKLNDVVEFL GVLTFDPIVM MDTDTLDENS DALSEAESVQ MPSGKVPRLH CLIHRKLETQ HFLHGSSLLP 301: EPKSPQIFKE IRESLMKYLT GLLGNDHIAA QFLLLHLLSK VHGRVDNVAV GKLSLNLIHL NKESMSIFGT QLSGALKSLL PFTQSIPLTI EYLNTASFGP 401: KKDYGINRLM PGVLQIADGT HLILDETELQ PGTLNSVGVE NANLLKNLLE CQKVEYDFQY YKMEMATDVQ MLIFSEGKSN IMPADLVLPL QPSQVNSLEV 501: ITPETAETWR CYLATCKSLS HSIGQELQQV VENDLVAARQ TDRSLGSQDL SRLLTMARMM SVSYGETTLS LEHWQMVLEL ERLRKERLK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)