suba logo
AT3G05740.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RECQ helicase l1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RECQ helicase l1 (RECQI1); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DNA helicase (RECQl4A) (TAIR:AT1G10930.1); Has 22913 Blast hits to 22836 proteins in 2673 species: Archae - 358; Bacteria - 13443; Metazoa - 2936; Fungi - 2132; Plants - 1261; Viruses - 9; Other Eukaryotes - 2774 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-191-MONOMEREC:3.6.4.12eggNOG:COG0514eggNOG:KOG0351
EMBL:AC012393EMBL:AJ404470EMBL:CP002686EnsemblPlants:AT3G05740
EnsemblPlants:AT3G05740.1entrez:819743Gene3D:1.10.10.10Gene3D:3.40.50.300
GeneID:819743Genevisible:Q9FT74GO:GO:0003676GO:GO:0005524
GO:GO:0005634GO:GO:0006310GO:GO:0008026GO:GO:0042631
GO:GO:0046872GO:GO:0070417Gramene:AT3G05740.1hmmpanther:PTHR13710
hmmpanther:PTHR13710:SF70HOGENOM:HOG000044388InParanoid:Q9FT74InterPro:IPR001650
InterPro:IPR004589InterPro:IPR011545InterPro:IPR011991InterPro:IPR014001
InterPro:IPR027417InterPro:IPR032284iPTMnet:Q9FT74KEGG:ath:AT3G05740
KO:K10901OMA:QQYCELKPaxDb:Q9FT74Pfam:PF00270
Pfam:PF00271Pfam:PF16124Pfam:Q9FT74Pfscan:PS51192
Pfscan:PS51194PhylomeDB:Q9FT74PRIDE:Q9FT74PRO:PR:Q9FT74
PROSITE:PS00690PROSITE:PS51192PROSITE:PS51194ProteinModelPortal:Q9FT74
Proteomes:UP000006548RefSeq:NP_187225.2SMART:SM00487SMART:SM00490
SMR:Q9FT74STRING:3702.AT3G05740.1SUPFAM:SSF52540TAIR:AT3G05740
tair10-symbols:RECQI1TIGRfam:TIGR00614TIGRFAMs:TIGR00614UniGene:At.10170
UniGene:At.49591UniProt:Q9FT74
Coordinates (TAIR10) chr3:+:1698180..1701228
Molecular Weight (calculated) 68504.70 Da
IEP (calculated) 5.15
GRAVY (calculated) -0.41
Length 606 amino acids
Sequence (TAIR10)
(BLAST)
001: MKDQDLELEK VRLISLATKL GFDEDSAKKC LDRFVDLYGD DGRDFITVEL CGDDFLAALA DFEEGTEEWD DIQAIESEAQ GNLAEMFDKS TNPSDNGFDT
101: DDDDDDSRVE VHVIEDSPEP KKKPEIVELD SSSDLEDVET RFKVPRRSQT CSRSMDYSME DSVSTISGRK PSVQISNKDH ETPSYEELQA LDDLEFANLV
201: IFGNKVFRPL QHQACRASME RKDCFVLMPT GGGKSLCYQL PATLKAGVTI VISPLLSLIQ DQIVALNLKF GIPATFLNSQ QTSSQAAAVL QELRRDNPSC
301: KLLYVTPEKI AGSSSFLETL RCLDRKGLLA GFVVDEAHCV SQWGHDFRPD YRELGCLKQN FPRVPVMALT ATATESVCQD VLKSLRIPRA PVLKMSFDRI
401: NLKYEVIVKT KEPLKQLQEL LRDRFKDQSG IVYCLSKSEC VDVAKFLNEK CKVKTVYYHA GVPAKQRVDV QRKWQTGEVR IVCATIAFGM GIDKADVRFV
501: IHNTLSKAVE SYYQESGRAG RDGLQAQCIC LYQKKDFSRV VCMLRNGQGR NMDRFKSAMA QAKKMQQYCE LKTECRRQML LEYFGESFDR MICKSSLNPC
601: DNCERS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)