AT1G04730.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Necessary for sister chromatid cohesion. Acts in synergy with ETG1. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CHROMOSOME TRANSMISSION FIDELITY 18 (CTF18); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: sister chromatid cohesion; LOCATED IN: replication fork; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: replication factor C1 (TAIR:AT5G22010.1); Has 4018 Blast hits to 4006 proteins in 709 species: Archae - 400; Bacteria - 666; Metazoa - 673; Fungi - 766; Plants - 379; Viruses - 21; Other Eukaryotes - 1113 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:1325385..1331086 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 107026.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.31 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||
| Length | 943 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEFDIPLPEE LELLEANSHF YEEEDEYLNF EEPPYPYPID GDEEKEEERV AHKEPHVRQS ESSDIKGCKR PRSLISDPIV NLDEVSPASD KRSKIDDNRV 101: EIEDEDWLRF SPVKEVVHVM EEEEEVVIPQ ETMLSRYASE IDGECFPITA PDGGDRVYAK FCRALGDEEV NKLDVKDKSN GLIKDPISVL LQQSEKEAFN 201: KVLQASSEDQ NETISAETSV MHEKLWVDKY SPSSFTELLS DEQTNREVLL WLKQWDASVF GSEIRSTTEA VLSALKRHST TSHHQKSDSA FTRKKQFNRW 301: SKESFGYSKN AEVSNTNTAD INDLWNKKSK LTGPPEQKIL LLCGAPGLGK TTLAHIAAKH CGYRVVEINA SDERSASAIE TRILDVVQMN SVTADSRPKC 401: LVIDEIDGAL GDGKGAVDVI LKMVLAERKH ATGKENVENV KTSSKKDRRT APLSRPVICI CNDLYAPALR PLRQIAKVHI FVQPTVSRVV NRLKYICNME 501: GMKARSFALS ALAEYTECDI RSCLNTLQFL YKKKETINVI DIGSQVVGRK DMSKSLFDIW KEIFTTRKMK RERSNDASGS GAKNFDFLHS LVSSRGDYDL 601: IFDGIHENIL QLHYHDPVMD KTISCLDGLG TSDLLHRYIM RTQQMPLYVY FPSLVIPIHR RVAQIQKPMI EWPKSYHRCR TLLVEKQESL RSWHHKIPPY 701: IGRHLSIKSF VEDSISPLLH ILSPPTLRPV ASHLLSDRQK EQLAGLVMLM CSYSLTYKNV KSDPVLSSLR EDAASDALVL ALDPHLFDFI NFKGHQFKHH 801: VLALAMKQVL VHEVEKQKIL QASGGKSGIL NKPEIKKINQ DLAKKTNAAA NESQRTPVTS KPPSVSVGTA TTSKPNSSDV KKASRNALNF FDRFRKSRKD 901: YEDPEDVQNR ATAKRDSRPL LFKFNEGFTN AVKRPVRMRE FLL |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)