AT1G67320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA primase, large subunit family | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA primase, large subunit family; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, large subunit, eukaryotic (InterPro:IPR016558), DNA primase, large subunit, eukaryotic/archaeal (InterPro:IPR007238); Has 451 Blast hits to 447 proteins in 212 species: Archae - 8; Bacteria - 0; Metazoa - 155; Fungi - 145; Plants - 53; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:25205520..25208966 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51622.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.85 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||
| Length | 449 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEVIRSQKRT VSNDVVSTPT LPLYLTAPHM EVRLEEFELF AIDRLRVLKG VSDGLARARN PNEMDDLVET LWKEHMRLSN VSEMINKDII SHFVLRLVYC 101: RSDELKKWFL SMETALFRHR FRLKKIEEQR AIVGEFGLPY KAVIGAELES LKERLGLVAR SHGQISSDVE NIYYKVPFEE VPDLVASRRV LLQKGFAFVA 201: GTQLVSLVVT QFRSHLSKAL ILTNRKWTTT IREREKDRLT PIVEALSTSY LGPDYSQSNE YADISLKDID QVSKSSFPLC MRHLFEKLRE DHHLKHGGRM 301: QLGLFLKLDD ALAFWREEFT KKVGSERFDK EYAYAIRHNY GKEGKRTDYT PYACSKIITS APGAGDHHGC PYRHFSEDNL KAALSRMGLS SRGMEDVMDK 401: VRNRHYQLAC TLTFEAVYGT SCDTGINHPN QYFEESQKIL KSKTPAAPV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)