AT1G26330.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : DNA binding | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), FY-rich, C-terminal (InterPro:IPR003889), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:9107625..9113520 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 131198.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.05 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||
| Length | 1189 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASPRVVSED RKSVDIEIVS VGALYTGSWD KKYWSSSRGK DRFPYPVGYK AVRAHSGNTY YMEIEEGAKG PLFLIRYLDE SWTGQTPDIA WGKLQKTDFS 0101: HLKIWHGKRF TCKMGGMEFF GFKNPLVQRL LRELVTNSHG MVESSPSSRA SHIRVNDERP VMCANPNLLC YLDMPVARKK RSRKPGITYQ NSVAKSVHKK 0201: PRFQDSLTGG EILNSAPVSI CSGKGEVETV GQQVALPEQF HSNHATNEYS SLPSEKPPQM KIFIPIQETN RLPDSCKSKP LSKFSEEFHG LQEKENKPND 0301: DNFLHESPNM TASSFCAPDT LDFLQDNTAS SAPKINDDTS CMKKEELTHA NMVVGEGILA EPNAEDLADS TLNLTSKKSD SDLVDQETAK TMMSLLLPQA 0401: IPLLKKTSSK KPPRNDMSDN CKTSQLNDAS GTAVSLAIRE SSGDDENMQV VAPDSDQDFA SNVSIAPDSF DESHLVGPGS GHIISSSQEV YPAVLPKMPI 0501: DEDHVPIVND LSVSALEENN QEEYMKRFMS IPHCTSSVNM ILSQESKERC AAEGNLLQKE HHSENKEPKS TFCSTEGNGF PVDTTPTEAC SVKKENHKVY 0601: IRKRVSTNQH RINRNLSSES KNSCRNTGED DSIRNMSPIN SSRILELQPT LSTNSVSDRT NPLGNESGHV TEQYQGPELV KVNNNTFTNV KSNEACVVPQ 0701: DTRSAHAFGS ASISSSSFPA SKFEDCQANI GEELGIQVSE PPSTESQYKE NTSEKCTSVQ EFPASSNLKL NRDVKINNEM EKTVELLGCY FHPMPVSSVL 0801: LRTVGNEIYI LVLSFATEDR VRTLFMYKMS AEAPSKGFPS IIGHTPAILP IVDDKSSGNG TLEISNLHFT PDGLHLILTG NIKTPYCRKR ETDCSCLICT 0901: SACFEENAVR IVQVKTGHVS LVTKLQADDS VQCVVVCDPN NLIAAVKSGN LIVWAMNSHW SGPTEEYVIL ANPCISSCIM ELKKIPKCPH LVIGHNGIGE 1001: FTIWDISKRS LVSRFVSPSN LIFEFIPTSL FAWHPVHSHS TIEDNVDMIL AATKLWFSKG VNNKTLVPAE VKDTAIWLLV STDLDSDAKC DRVESPVRCW 1101: RLALLVKDQL ILGSQLDPRA DVAGTISGHG VAGTLDGLVY MWDLSTGTKL GSLHDFKGQR VSCISTDDSR NICIASEDGQ LLVYCHPEK |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)