AT1G20720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RAD3-like DNA-binding helicase protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20750.1); Has 2863 Blast hits to 2328 proteins in 675 species: Archae - 243; Bacteria - 679; Metazoa - 737; Fungi - 397; Plants - 210; Viruses - 5; Other Eukaryotes - 592 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7185658..7192794 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 131623.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.84 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1175 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVSSTSKSDS KEEVKQTLNS KNPKNVYQIG GLQVEFPYQP YGTQLAFMSR VISTLDRAQR DGHCHALLES PTGTGKSLSL LCSVLAWQQN YKSRLLKGNL 0101: SHSKAAPEAA TDPLNHGGGF IPETQPSDTP ASTNVEKAET ATKKRTKIPT IYYASRTHSQ ITQVIREYRK TGYRVPMAVL ASRKHYCTNR HVLGKDNVDD 0201: ECRLLLKDKA NIQCSEFKNV NKITSHPSLQ PRGHNEVHDI EDLVKVGKNV RGCPYFASWS MAENAQLVFC PYSYIVNPVI RAGVEVDLKG AIIIFDEAHN 0301: MEDIAREAGS INLEEDTLFK LQNELEQMSV AQPMIYQPLC EVVEGLISWI GRKKDSLAKR DFQHYFSSWT GDKALRELEE SNITRECFPI LLECFTKAIR 0401: TSKEAEMESD MLYLSGISVL TLEELFSSLT YFFSRNGSHI LDYQLGLQRS TKRGDPSGTW THTFSLWCMN PAVVFKDLAD ISLSVILTSG TLSPMNSFSS 0501: ELGMQFGTSL EAPHVIDPNM QVWAGAISNG PSNYPLNASY KTADAYSFQD ALGKSLEEIC TIVPGGSLVF FPSYKLMEKL CMRWRETEQW SRLCLKKDLF 0601: VEPRGGAQDE FDSVLKGYYD SIRGKNKIIG RNRRAKKAGP IKTETQDDSK KGAAFLAVCR GKVSEGIDFA DDNARAVIIV GIPFPNLHDI QVGLKKKYND 0701: TYKSSKSLLG GSEWYCQQAY RALNQAAGRC IRHRFDYGAI IFLDERYKEQ RNRASISKWL RQSIKVYDNF EASMEGLRSF FNSVKEQVDS KMLGSQEDSV 0801: EKNFSSEKQS KEFRRKENQI QNKSSQVEPK VEDYTNSNPK YHFMYESKAF GYHRDVKPKI AEDLRSMGHS AQTFVQVKEE AECCREVIDL ECGVQPDLGY 0901: CEVSSVTNCD EAPETSFVQE TSGMINGISV ASPCSCSMNE SSSPATVGLR SPGSPDQLLK QHISTPNFRK SPLGTESSVV ATSERYSFGG TRSLTLEAES 1001: SFNMSVNSQA LKRRKFTSSP VIDLEVENSD APRPNCSMVN QRLCRKFEGL KGQGIWCEQD GCVFNTIYCP FCSIPNTCLG VQVMATDSSN VQFLSKILFF 1101: ADHLEVTNEA ASKDSTLKHK EPLAETNAAV DKSDVLKSID RFAYSPNQQQ ESGGWRTTKS KLRLPKRNLP TSKKA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)