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AT3G25100.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At3g25100
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cell division cycle 45
Curator
Summary (TAIR10)
Required for normal meiosis, may act in the last round of DNA replication prior to meiosis, sequence similar to yeast CDC45
Computational
Description (TAIR10)
cell division cycle 45 (CDC45); CONTAINS InterPro DOMAIN/s: CDC45-like protein (InterPro:IPR003874); Has 1810 Blast hits to 1657 proteins in 252 species: Archae - 0; Bacteria - 25; Metazoa - 666; Fungi - 449; Plants - 176; Viruses - 35; Other Eukaryotes - 459 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR8EeggNOG:KOG2475EMBL:AB026647EMBL:AJ505146
EMBL:CP002686EnsemblPlants:AT3G25100EnsemblPlants:AT3G25100.1entrez:822101
GeneID:822101GO:GO:0000727GO:GO:0003682GO:GO:0003688
GO:GO:0003697GO:GO:0005656GO:GO:0006267GO:GO:0006270
GO:GO:0006279GO:GO:0031261GO:GO:0031298GO:GO:0031938
GO:GO:0032508GO:GO:0043138GO:GO:0048229GO:GO:0051301
GO:GO:1900087GO:GO:1902977Gramene:AT3G25100.1hmmpanther:PTHR10507
hmmpanther:PTHR10507:SF0HOGENOM:HOG000204377InterPro:IPR003874KEGG:ath:AT3G25100
KO:K06628ncoils:CoilOMA:GAEFFHEPANTHER:PTHR10507
Pfam:PF02724PhylomeDB:Q9LSG6Proteomes:UP000006548Reactome:R-ATH-113510
Reactome:R-ATH-68962Reactome:R-ATH-69205RefSeq:NP_189146.1STRING:3702.AT3G25100.1
TAIR:AT3G25100tair10-symbols:CDC45UniGene:At.49390UniProt:Q9LSG6
Coordinates (TAIR10) chr3:+:9144292..9146082
Molecular Weight (calculated) 67554.90 Da
IEP (calculated) 6.82
GRAVY (calculated) -0.32
Length 596 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRIKKVESF YAKLRESATS LSSQNPLLIF PSTSDVDSLC ALKVITHILE SDSIQYSCFP VSSFLEIHKY AGPAGLCSTS LESPPVTILL INWGCHRDLK
101: LVLKLGPSAR VFVVDSHRPI HLHNLSDYNE QVVVLHTDDD ERQGDLAYDF DVLKLANESF QLRVEDAGEE SDEEEEDEEE DEEDDDDDDG DRPSKRRKMG
201: DGVKVFKKLK RDYYKMGTFH GKPSGCLLFE LSHMLRKNTN ELLWLACVSL TDQFVHERLT DERYQAAVME LEQHINSSGN IDKITSVTLK DGTKVRAPDC
301: SRISYEEEPR LMLLREWTLF DSMLCSSYIA TKLKTWSDNG IKKLKLLLAR MGFALIECQQ KFPYMSLEVK RKMKQEFDRF LPEYGLNDFY YRSFLRLHGY
401: SSRVSAADVV YGITALLESF LGSGGSSASK QFGEAYDALS LNNLDKLRSG MQQAIKVQRA ILRQGSAAIT KSGCIRSGRK FRWVKIEDSM DAKYLGYPQA
501: LTKFCYFLMD ALREKGARMK PMLCACASQQ PGKILVVGVC GKPRLGAVRG NAFGNAFRKA AQESRADYFH ELFESSWIVL DASAVNSFMI RLTEKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)