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AT1G35530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DEAD/DEAH box RNA helicase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEAD/DEAH box RNA helicase family protein ; FUNCTIONS IN: in 6 functions; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36020.1); Has 20447 Blast hits to 20241 proteins in 2853 species: Archae - 674; Bacteria - 11662; Metazoa - 2557; Fungi - 1790; Plants - 1282; Viruses - 18; Other Eukaryotes - 2464 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1111eggNOG:KOG0354EMBL:CP002684EnsemblPlants:AT1G35530
EnsemblPlants:AT1G35530.1entrez:840448ExpressionAtlas:F4HYE5Gene3D:3.40.50.300
GeneID:840448GO:GO:0003677GO:GO:0004386GO:GO:0005524
Gramene:AT1G35530.1hmmpanther:PTHR14025hmmpanther:PTHR14025:SF20InterPro:IPR001650
InterPro:IPR006935InterPro:IPR014001InterPro:IPR027417PaxDb:F4HYE5
Pfam:PF00271Pfam:PF04851Pfscan:PS51192Pfscan:PS51194
PRIDE:F4HYE5PROSITE:PS51192PROSITE:PS51194ProteinModelPortal:F4HYE5
Proteomes:UP000006548RefSeq:NP_174785.1SMART:SM00487SMART:SM00490
SMR:F4HYE5STRING:3702.AT1G35530.2SUPFAM:SSF52540TAIR:AT1G35530
UniGene:At.39558UniProt:F4HYE5
Coordinates (TAIR10) chr1:+:13089994..13097078
Molecular Weight (calculated) 148363.00 Da
IEP (calculated) 6.31
GRAVY (calculated) -0.49
Length 1324 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGSRVPIETI EEDGEFDWEA AVKEIDLACL KTTNASSSSS SHFTPLANPP ITANLTKPPA KRQSTLDKFI GRTEHKPENH QVVSECGVND NDNSPLVGID
0101: PEAAKTWIYP GFVPLRDYQF AITKTALFSN TLVALPTGLG KTLIAAVVMY NYFRWFPQGK IVFAAPSRPL VMQQIEACHN IVGIPQEWTI DLTGQTCPSK
0201: RAFLWKSKRV FFVTPQVLEK DIQSGTCLTN YLVCLVIDEA HRALGNYSYC VVVRELMAVP IQLRILALTA TPGSKTQAIQ GIIDNLQIST LEYRNESDHD
0301: VCPYVHDRKL EVIEVPLGQD ADDVSKRLFH VIRPYAVRLK NFGVNLNRDI QTLSPHEVLM ARDKFRQAPL PGLPHVNHGD VESCFAALIT LYHIRKLLSS
0401: HGIRPAYEML EEKLKEGPFA RLMSKNEDIR MTKLLMQQRL SHGAPSPKLS KMLEILVDHF KVKDPKTSRV IIFSNFRGSV RDIMNALSNI GDMVKATEFI
0501: GQSSGKTLKG QSQKIQQAVL EKFRAGGFNV IVATSIGEEG LDIMEVDLVI CFDANVSPLR MIQRMGRTGR KNNGRIPHVY KPEVQHVEFS IKQFVPRGKK
0601: LQEEYATETP AFQKKLTPAE THMLAKYYNN PDEEKLRVSL IAFPHFQTLP SKVHKVMHSR QTGMLIDAMQ HLQEPTFSEQ SKSFFTEFRA PLGEREELDT
0701: GLRVTNDPKD LHSVRDLEVN TSQRKAKQVE SPTSTLETTE KDYEESSPTH RYLFSSECAS VDTLGNVFVM PVPLLFFPNV LESDNTPLPK TEKQHSCRNT
0801: SHIDLVPVDT SEKHRQDNIS CKLKERFSPD GASETLETHS LVKRNSTRVG EDDVANSVGE IVLSSDEDDC EGLELSPRLT NFIKSGIVPE SPVYDQGEAN
0901: REEDLEFPQL SSPMRFSNEL AGESSFPERK VQHKCNDYNI VSTTTELRTP QKEVGLANGT ECLAVSPIPE DWRTPLANLT NTNSSARKDW RVSSGEKLET
1001: LRQPRKLKRL RRLGDCSSAV KENYPGITEA DHIRSRSRGK KHIRGKKKMI MDDDVQVFID EEAEVSSGAE MSADENEDVT GDSFEDSFID DGTMPTANTQ
1101: AESGKVDMMA VYRYIQPKIS FFYCEVNELI KNHKVSFHRR SLLSQSPLPA RFRDLAASSL SPYSAGPLTR INESRSDSDK SLSSLRTPKT TNSESNQDAM
1201: MIGNLSVVQI SSDSRKRKFS LCNSANAPVI NLESKFAAHA QATEKESHEG VRSNAGALEY NDDDDDAFFA TLDFDAMEAQ ATLLLSKQRS EAKEKEDATV
1301: IPNPGMQRSD GMEKDAPSFD LGLW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)